Socially mediated induction and suppression of antibiosis during bacterial coexistence, Proceedings of the National Academy of Sciences, vol.5, issue.35, pp.11054-11059, 2015. ,
DOI : 10.1093/bioinformatics/17.8.754
Characterization of two Streptomyces ambofaciens recA mutants: identification of the RecA protein by immunoblotting, FEMS Microbiology Letters, vol.149, issue.2, pp.181-187, 1997. ,
DOI : 10.1111/j.1574-6968.1997.tb10326.x
Early steps of double-strand break repair in Bacillus subtilis, DNA Repair, vol.12, issue.3, pp.162-176, 2013. ,
DOI : 10.1016/j.dnarep.2012.12.005
The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends, Genes & Development, vol.22, issue.4, pp.512-527, 2008. ,
DOI : 10.1101/gad.1631908
Prokaryotic Homologs of the Eukaryotic DNA-End-Binding Protein Ku, Novel Domains in the Ku Protein and Prediction of a Prokaryotic Double-Strand Break Repair System, Genome Research, vol.11, issue.8, pp.1365-1374, 2001. ,
DOI : 10.1101/gr.181001
SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories, Nucleic Acids Research, vol.28, issue.18, pp.3417-3422, 2000. ,
DOI : 10.1093/nar/28.18.3417
Ribonucleolytic resection is required for repair of strand displaced nonhomologous end-joining intermediates, Proceedings of the National Academy of Sciences, vol.149, issue.5, pp.1984-1991, 2013. ,
DOI : 10.1016/j.cell.2012.04.011
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2) DNA ligase C1 mediates the LigD-independent nonhomologous end-joining pathway of Mycobacterium smegmatis, Nature J. Bacteriol, vol.417, issue.196, pp.141-147, 1128. ,
Analysis of gene control signals by DNA fusion and cloning in Escherichia coli, Journal of Molecular Biology, vol.138, issue.2, pp.179-207, 1980. ,
DOI : 10.1016/0022-2836(80)90283-1
Genetics of Differentiation in Streptomyces, Annual Review of Microbiology, vol.47, issue.1, pp.685-711, 1993. ,
DOI : 10.1146/annurev.mi.47.100193.003345
Evolution of the Terminal Regions of the Streptomyces Linear Chromosome, Molecular Biology and Evolution, vol.23, issue.12, pp.2361-2369, 2006. ,
DOI : 10.1093/molbev/msl108
URL : https://hal.archives-ouvertes.fr/hal-00112247
Origins and Evolution of Antibiotic Resistance, Microbiology and Molecular Biology Reviews, vol.74, issue.3, pp.417-433, 2010. ,
DOI : 10.1128/MMBR.00016-10
Identification of a conserved 5???-dRP lyase activity in bacterial DNA repair ligase D and its potential role in base excision repair, Nucleic Acids Research, vol.44, issue.4, pp.1833-1844, 2016. ,
DOI : 10.1093/nar/gkw054
Efficient processing of abasic sites by bacterial nonhomologous end-joining Ku proteins, Nucleic Acids Research, vol.42, issue.21, pp.13082-13095, 2014. ,
DOI : 10.1093/nar/gku1029
Mycobacterial Ku and Ligase Proteins Constitute a Two-Component NHEJ Repair Machine, Science, vol.306, issue.5696, pp.683-685, 2004. ,
DOI : 10.1126/science.1099824
Modernizing the Nonhomologous End-Joining Repertoire: Alternative and Classical NHEJ Share the Stage, Annual Review of Genetics, vol.47, issue.1, pp.433-455, 2013. ,
DOI : 10.1146/annurev-genet-110711-155540
URL : https://hal.archives-ouvertes.fr/pasteur-01471700
Spore Coat and Spore Membrane, International Journal of Microbiology, vol.33, issue.5, pp.1-9, 2012. ,
DOI : 10.1046/j.1365-2672.2002.01687.x
Occurrence of deletions, associated with genetic instability in Streptomyces ambofaciens, is independent of the linearity of the chromosomal DNA., Journal of Bacteriology, vol.179, issue.14, 1997. ,
DOI : 10.1128/jb.179.14.4553-4558.1997
Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens, Proceedings of the National Academy of Sciences, vol.7, issue.6, pp.14296-14301, 1998. ,
DOI : 10.1016/S0959-437X(97)80046-9
Pseudomonas fluorescens Pirates both Ferrioxamine and Ferricoelichelin Siderophores from Streptomyces ambofaciens, Applied and Environmental Microbiology, vol.81, issue.9, pp.3132-3141, 2015. ,
DOI : 10.1128/AEM.03520-14
URL : https://hal.archives-ouvertes.fr/hal-01269032
The rise and fall of mutator bacteria, Current Opinion in Microbiology, vol.4, issue.5, pp.582-585, 2001. ,
DOI : 10.1016/S1369-5274(00)00254-X
Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C, Nature Structural & Molecular Biology, vol.176, issue.4, pp.304-312, 2004. ,
DOI : 10.1101/gad.315804
Mechanisms of Chromosome Number Evolution in Yeast, PLoS Genetics, vol.55, issue.4, 2011. ,
DOI : 10.1371/journal.pgen.1002190.s010
Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways PCRtargeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin, Mol. Microbiol. Proc. Natl. Acad. Sci. U.S.A, vol.79, issue.100, pp.316-330, 2003. ,
Implication of RuvABC and RecG in homologous recombination in Streptomyces ambofaciens, Research in Microbiology, vol.168, issue.1, p.3, 2016. ,
DOI : 10.1016/j.resmic.2016.07.003
Chromosome, Annual Review of Genetics, vol.40, issue.1, pp.1-23, 2006. ,
DOI : 10.1146/annurev.genet.40.110405.090639
A recA Null Mutation May Be Generated in Streptomyces coelicolor, Journal of Bacteriology, vol.188, issue.19, pp.6771-6779, 2006. ,
DOI : 10.1128/JB.00951-06
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis, Nature Biotechnology, vol.21, issue.5, pp.526-531, 1038. ,
DOI : 10.1038/nbt820
by Nonhomologous Recombination of Deletion Ends, Bioscience, Biotechnology, and Biochemistry, vol.67, issue.5, pp.1101-1108, 2003. ,
DOI : 10.1271/bbb.67.1101
Comprehensive transposon mutant library of Pseudomonas aeruginosa, Proceedings of the National Academy of Sciences, vol.20, issue.10, pp.14339-14344, 2003. ,
DOI : 10.1038/nbt740
Comparative Genomics Reveals the Core and Accessory Genomes of Streptomyces Species, Journal of Microbiology and Biotechnology, vol.25, issue.10, pp.1599-1605, 2015. ,
DOI : 10.4014/jmb.1504.04008
Multiple Ku orthologues mediate DNA non-homologous end-joining in the free-living form and during chronic infection of Sinorhizobium meliloti, Molecular Microbiology, vol.103, issue.2, pp.350-363, 2008. ,
DOI : 10.1111/j.1365-2958.2007.06036.x
Genetic instability and hypervariability in Streptomyces ambofaciens: towards an understanding of a mechanism of genome plasticity, Molecular Microbiology, vol.95, issue.5, pp.707-714, 1990. ,
DOI : 10.1016/0014-5793(87)81547-8
The chromosomal DNA of Streptomyces lividans 66 is linear The pathway-specific regulator ClaR of Streptomyces clavuligerus has a global effect on the expression of genes for secondary metabolism and differentiation, Mol. Microbiol. Appl. Environ. Microbiol, vol.10, issue.81, pp.923-933, 1128. ,
C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair, Nucleic Acids Research, vol.44, issue.10, pp.4785-4806, 2016. ,
DOI : 10.1093/nar/gkw149
URL : https://hal.archives-ouvertes.fr/hal-01457533
Role of DNA Repair by Nonhomologous-End Joining in Bacillus subtilis Spore Resistance to Extreme Dryness, Mono- and Polychromatic UV, and Ionizing Radiation, Journal of Bacteriology, vol.189, issue.8, pp.3306-3311, 1128. ,
DOI : 10.1128/JB.00018-07
Mutational analysis of the Streptomyces lividans recA gene suggests that only mutants with residual activity remain viable, Molecular and General Genetics MGG, vol.255, issue.4, pp.420-428, 1007. ,
DOI : 10.1007/s004380050514
NHEJ enzymes LigD and Ku participate in stationary-phase mutagenesis in Pseudomonas putida, DNA Repair, vol.31, pp.11-18, 2015. ,
DOI : 10.1016/j.dnarep.2015.04.005
A new mathematical model for relative quantification in real-time RT-PCR, Nucleic Acids Research, vol.29, issue.9, 2001. ,
DOI : 10.1093/nar/29.9.e45
Une nouvelle espèce de Streptomyces productrice d'antibiotiques: Streptomyces ambofaciens n. sp. caractères culturaux, Ann. Inst. Pasteur, vol.87, pp.702-707, 1954. ,
NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation, DNA Repair, vol.6, issue.9, pp.1271-1276, 2007. ,
DOI : 10.1016/j.dnarep.2007.02.009
Domain Structure of a NHEJ DNA Repair Ligase from Mycobacterium tuberculosis, Journal of Molecular Biology, vol.351, issue.3, pp.531-544, 2005. ,
DOI : 10.1016/j.jmb.2005.06.038
Excisable Cassettes: New Tools for Functional Analysis of Streptomyces Genomes, Applied and Environmental Microbiology, vol.72, issue.7, 2006. ,
DOI : 10.1128/AEM.00167-06
Comparative and Evolutionary Analysis of the Bacterial Homologous Recombination Systems, PLoS Genetics, vol.188, issue.2, 2005. ,
DOI : 0378-1097(2000)188[0209:COGAGC]2.0.CO;2
as symbionts: an emerging and widespread theme?, FEMS Microbiology Reviews, vol.36, issue.4, pp.862-876, 2012. ,
DOI : 10.1111/j.1574-6976.2011.00313.x
URL : http://hdl.handle.net/11858/00-001M-0000-0012-2BD3-C
Two Mechanisms Produce Mutation Hotspots at DNA Breaks in Escherichia coli, Cell Reports, vol.2, issue.4, pp.714-721, 2012. ,
DOI : 10.1016/j.celrep.2012.08.033
Mycobacterial Nonhomologous End Joining Mediates Mutagenic Repair of Chromosomal Double-Strand DNA Breaks, Journal of Bacteriology, vol.189, issue.14, pp.5237-5246, 1128. ,
DOI : 10.1128/JB.00332-07
Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2), Microbiology, vol.145, issue.9, pp.2221-2227, 1999. ,
DOI : 10.1099/00221287-145-9-2221
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.30, issue.12, pp.2725-2729, 2013. ,
DOI : 10.1093/molbev/mst197
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840312
Complete genome sequence of Streptomyces ambofaciens ATCC 23877, the spiramycin producer, Journal of Biotechnology, vol.214, pp.117-118, 2015. ,
DOI : 10.1016/j.jbiotec.2015.09.020
URL : https://hal.archives-ouvertes.fr/hal-01258341
Subtelomere Plasticity in the Bacterium Streptomyces, Subtelomeres, pp.243-258, 2014. ,
DOI : 10.1007/978-3-642-41566-1_14
URL : https://hal.archives-ouvertes.fr/hal-01478830
Chromosomal Arm Replacement in Streptomyces griseus, Journal of Bacteriology, vol.185, issue.3, pp.1120-1124, 2003. ,
DOI : 10.1128/JB.185.3.1120-1124.2003
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC142817
Evidence that an Additional Mutation Is Required To Tolerate Insertional Inactivation of the Streptomyces lividans recA Gene, Journal of Bacteriology, vol.183, issue.14, pp.4374-4381, 2001. ,
DOI : 10.1128/JB.183.14.4374-4381.2001
Genetic instability of the Streptomyces chromosome, Molecular Microbiology, vol.27, issue.2, pp.239-246, 1998. ,
DOI : 10.1007/s004380050380
The Forespore Line of Gene Expression in Bacillus subtilis, Journal of Molecular Biology, vol.358, issue.1, pp.16-37, 2006. ,
DOI : 10.1016/j.jmb.2006.01.059
Identification of a DNA Nonhomologous End-Joining Complex in Bacteria, Science, vol.297, issue.5587, pp.1686-1689, 2002. ,
DOI : 10.1126/science.1074584
End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens, Molecular Microbiology, vol.88, issue.1955, pp.411-425, 2003. ,
DOI : 10.1046/j.1365-2958.2003.03698.x
Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus, Proceedings of the National Academy of Sciences, vol.28, issue.4, pp.9661-9666, 2006. ,
DOI : 10.1073/pnas.0337542100
The adnAB Locus, Encoding a Putative Helicase-Nuclease Activity, Is Essential in Streptomyces, Journal of Bacteriology, vol.196, issue.14, pp.2701-2708, 1128. ,
DOI : 10.1128/JB.01513-14
URL : https://hal.archives-ouvertes.fr/hal-01474715
Deletion of ku homologs increases gene targeting frequency in Streptomyces avermitilis Characterization of Mycobacterium smegmatis PolD2 and PolD1 as RNA/DNA polymerases homologous to the POL domain of bacterial DNA ligase D Characterization of Agrobacterium tumefaciens DNA ligases C and D, J. Ind. Microbiol. Biotechnol. Biochemistry Nucleic Acids Res, vol.39, issue.35, pp.917-925, 2007. ,
Gap Filling Activities of Pseudomonas DNA Ligase D (LigD) Polymerase and Functional Interactions of LigD with the DNA End-binding Ku Protein, Journal of Biological Chemistry, vol.285, issue.7, pp.4815-4825, 2010. ,
DOI : 10.1074/jbc.M109.073874
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