Exploration types of ectomycorrhizae: A proposal to classify ectomycorrhizal mycelial systems according to their patterns of differentiation and putative ecological importance, Mycorrhiza, vol.11, pp.107-114, 2001. ,
Basic local alignment search tool, Journal of Molecular Biology, vol.215, pp.403-410, 1990. ,
Quantifying microbial communities with 454 pyrosequencing: does read abundance count?, Molecular Ecology, vol.19, pp.5555-5565, 2010. ,
Diversity of Peronosporomycete (Oomycete) communities associated with the rhizosphere of different plant species, Microbial Ecology, vol.51, pp.36-50, 2006. ,
, Phytophthora spp. Associated with Forest Soils in Eastern and North-Central U.S. Oak Ecosystems. Plant Disease, vol.91, pp.705-710, 2007.
Root distribution of Fagus sylvatica in a chronosequence in western France, Journal of Forest Research, vol.13, pp.176-184, 2008. ,
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases, BMC Microbiology, vol.10, p.189, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00784435
Recent developments in Phytophthora diseases of trees and natural ecosystems in Europe, Progress in Research on Phytophthora Diseases of Forest Trees. Proceedings of the 3rd International IUFRO Working Party 7.02.09 Meeting, pp.5-16, 2004. ,
Proceedings of the fourth meeting of the International Union of Forest Research Organizations (IUFRO) Working Party S07, Phytophthora biodiversity: how many Phytophthora species are there? In: Goheen EM, Frankel SJ (tech. coords.), pp.101-115, 2009. ,
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity, New Phytologist, vol.184, pp.449-456, 2009. ,
Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand, Fungal Ecology, vol.4, pp.22-31, 2011. ,
A molecular phylogeny of Phytophthora and related Oomycetes, Fungal Genetic Biolology, vol.30, pp.17-32, 2000. ,
Tools to detect, identify and monitor Phytophthora species in natural ecosystems, Journal of Plant Pathology, vol.89, pp.13-28, 2007. ,
Guide des champignons de France et d'Europe, 1994. ,
The role of ectomycorrhizal communities in forest ecosystem processes: New perspectives and emerging concepts, Soil Biology & Biochemistry, vol.42, pp.679-698, 2010. ,
Temporal changes in the ectomycorrhizal community in two soil horizons of a temperate oak forest, Applied and Environmental Microbiology, vol.74, pp.5792-5801, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-01195010
A leap forward in geographic scale for forest ectomycorrhizal fungi, Annals of Forest Science, vol.67, 0200. ,
URL : https://hal.archives-ouvertes.fr/hal-00883618
Axenic synthesis of ericoid mycorrhiza in Vaccinium angustifolium Ait. By Oidiodendron species, New Phytologist, vol.103, pp.391-396, 1986. ,
How many soil samples are needed to show that Phytophthora is absent from sites in the South-west of Western Australia?, Australasian Plant Pathology, vol.34, pp.293-297, 2005. ,
Vertical niche differentiation of ectomycorrhizal hyphae in soil as shown by T-RFLP analysis, New Phytologist, vol.156, pp.527-535, 2002. ,
The ade4 package: implementing the duality diagram for ecologists, Journal of Statistical Software, vol.22, pp.1-20, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00434575
Une nouvelle méthode de dosage du phosphore assimilable dans les sols forestiers, Bulletin de l'AFES, vol.41, pp.193-198, 1959. ,
Search and clustering orders of magnitude faster than BLAST, Bioinformatics, vol.26, pp.2460-2461, 2010. ,
Phytophthora diseases worldwide, p.562, 1996. ,
Detection, Distribution, Sporulation, and Survival of Phytophthora ramorum in a California Redwood-Tanoak Forest Soil, Ecology and Epidemiology, vol.97, pp.1366-1375, 2007. ,
ITS primers with enhanced specificity for basidiomycetes -application to the identification of mycorrhizae and rusts, Molecular Ecology, vol.2, pp.113-118, 1993. ,
Fine-scale distribution of pine ectomycorrhizas and their extramatrical mycelium, New Phytologist, vol.170, pp.381-390, 2006. ,
Spatial patterns of soil pathogens in declining Mediterranean forests: implications for tree species regeneration, New Phytologist, vol.194, pp.1014-1024, 2012. ,
Spatial scaling of microbial eukaryote diversity, Nature, vol.432, pp.747-750, 2004. ,
Spatial scaling of microbial biodiversity, TRENDS in Ecology and Evolution, vol.21, pp.501-507, 2006. ,
Phytophthora species in oak forests of north-east France, Annals of Forest Science, vol.56, pp.539-547, 1999. ,
URL : https://hal.archives-ouvertes.fr/hal-00883297
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences, Fungal Biology Reviews, vol.25, pp.38-47, 2011. ,
Relations between mycorrhizas and fruitbodies of mycorrhizal fungi in Douglas fir plantations in the Netherlands, Acta botanica Neerlandica, vol.37, pp.243-249, 1988. ,
Vertical distribution of fungal communities in tallgrass prairie soil, Mycologia, vol.102, pp.1027-1041, 2010. ,
Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease, Plant Pathology, vol.49, pp.706-718, 2000. ,
Involvement of Phytophthora species in the decline of European beech in Europe and the USA, Mycologist, vol.19, pp.159-166, 2005. ,
High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples, Mycorrhiza, vol.22, pp.309-315, 2012. ,
Disproportionate abundance between ectomycorrhizal root tips and their associated mycelia, FEMS Microbiology Ecology, vol.58, pp.214-224, 2006. ,
The genus Phytophthora anno 2012, Phytopathology, vol.102, pp.348-364, 2012. ,
Diversity of an ectomycorrhizal fungal community studied by a root tip and total soil DNA approach, Mycorrhiza, vol.15, pp.1-6, 2005. ,
Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities, FEMS Microbiology Ecology, vol.49, pp.319-332, 2004. ,
Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest, New Phytologist, vol.173, pp.611-620, 2007. ,
Genome sequencing in microfabricated high-density picolitre reactors, Nature, vol.437, pp.376-380, 2005. ,
Comparative studies on the fine root status of healthy and declining spruce and beech trees in the Bavarian Alps and occurrence of Phytophthora and Pythium species, Forest Pathology, vol.31, pp.257-273, 2001. ,
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in highthroughput community assays and molecular ecology, Fungal Ecology, vol.3, pp.284-287, 2010. ,
Fungal community analysis by large-scale sequencing of environmental samples, Applied and Environmental Microbiology, vol.71, pp.5544-5550, 2005. ,
, , 2011.
Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest, New Phytologist, vol.184, pp.424-437, 2009. ,
Nitrogen addition in a Norway spuce stand altered macromycetes sporocarp production and belowground ectomycorrhizal species composition, New Phytologist, vol.149, pp.311-325, 2001. ,
Spatial and temporal ecology of Scots pine ectomycorrhizas, New Phytologist, vol.186, pp.755-768, 2010. ,
Accurate determination of microbial diversity from 454 pyrosequencing data, Nature Methods, vol.6, pp.639-641, 2009. ,
, R: A language and environment for statistical computing. R Foundation for Statistical Computing, 2011.
Ectomycorrhizal fungal diversity: separating the wheat from the chaff, Fungal Diversity, vol.33, pp.1-45, 2008. ,
Soil bacterial and fungal communities across a pH gradient in an arable soil, The ISME Journal, vol.4, pp.1340-1351, 2010. ,
Vertical distribution of ectomycorrhizal fungal taxa in a podzol soil profile, New Phytologist, vol.159, pp.775-783, 2003. ,
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi, Proceedings of the National Academy of Sciences, vol.109, pp.6241-6246, 2012. ,
A molecular method to assess Phytophthora diversity in environmental samples, Journal of Microbiological Methods, vol.88, pp.356-368, 2012. ,
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Applied Environmental Microbiology, vol.75, pp.7537-7541, 2009. ,
Agaricales and related secotioid gasteromycetes, Mycorrhizal Symbiosis, vol.4, 1973. ,
Fungal diversity in ectomycorrhizal communities: sampling effort and species detection, Plant and Soil, vol.244, pp.19-28, 2002. ,
Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest, New Phytologist, vol.159, pp.153-165, 2003. ,
Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages, Mycorrhiza, vol.20, pp.217-263, 2010. ,
Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar, Molecular Ecology, vol.20, pp.3071-3080, 2011. ,
Species composition of an ectomycorrhizal fungal community along a local nutrient gradient in a boreal forest, New Phytologist, vol.170, pp.873-884, 2006. ,
Species abundance distributions and richness estimations in fungal metagenomics -lessons learned from community ecology, Molecular Ecology, vol.20, pp.275-285, 2011. ,
Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil, Environmental Microbiology Reports, vol.2, pp.281-288, 2010. ,
Spatial distribution of sporocarps of stipitate hydnoid fungi and their belowground mycelium, FEMS Microbiology Ecology, vol.69, pp.344-352, 2009. ,
First Report of Phytophthora cactorum associated with beech decline in Italy, Plant Disease, vol.92, p.1708, 2008. ,
Production of ectomycorrhizal mycelium peaks during canopy closure in Norway spruce, New Phytologist, vol.187, pp.1124-1134, 2010. ,
Assessing diversity of arbuscular mycorrhizal fungi in a local community: role of sampling effort and spatial heterogeneity, Mycorrhiza, vol.17, pp.429-437, 2007. ,
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, PCR Protocols: A Guide to Methods and Applications, pp.315-322, 1990. ,