, Arbre phylogénétique d'un gène de fonction, le gène codant pour les Dye peroxydases, construit à partir de 8000 séquences nucléotidiques codantes pour des Dyp issues de génomes complets bactériens accessibles sur blast. Il a été créé sur ARB en utilisant l'algorithme du maximum de vraisemblance, Figure, vol.12
, Bibliographie
RHA1 as a Lignin Peroxidase, Biochemistry, vol.50, issue.23, pp.5096-5107, 2011. ,
DOI : 10.1021/bi101892z
Laccases are widespread in bacteria, Trends in Biotechnology, vol.18, issue.2, pp.41-42, 2000. ,
DOI : 10.1016/S0167-7799(99)01406-7
Two- and three-domain bacterial laccase-like genes are present in drained peat soils, Soil Biology and Biochemistry, vol.43, issue.5, pp.975-83, 2011. ,
DOI : 10.1016/j.soilbio.2011.01.013
Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes, PLoS ONE, vol.89, issue.10, p.25724, 2011. ,
DOI : 10.1371/journal.pone.0025724.s006
Bacterial Lignin Peroxidase: A Tool for Biobleaching and Biodegradation of Industrial Effluents, Universal Journal of Environmental Research and Technology, vol.2, issue.1, pp.58-64, 2012. ,
The emerging role for bacteria in lignin degradation and bio-product formation, Current Opinion in Biotechnology, vol.22, issue.3, pp.394-400, 2011. ,
DOI : 10.1016/j.copbio.2010.10.009
Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester, Environmental Microbiology, vol.62, issue.8, pp.1104-1119, 2005. ,
DOI : 10.1007/BF00174484
DyP-type peroxidases: a promising and versatile class of enzymes, Journal of Industrial Microbiology & Biotechnology, vol.69, issue.1, pp.1-7, 2014. ,
DOI : 10.1002/prot.21550
Structure???function relationship among bacterial, fungal and plant laccases, Journal of Molecular Catalysis B: Enzymatic, vol.68, issue.2, pp.117-145, 2011. ,
DOI : 10.1016/j.molcatb.2010.11.002
Laccases from Actinobacteria?What We Have and What to Expect Advances in Microbiology 2014, 2014. ,
Microbial enzyme systems for lignin degradation and their transcriptional regulation, Frontiers in Biology, vol.69, issue.2???3, pp.448-71, 2014. ,
DOI : 10.1002/prot.21673
, FEMS Microbiology Letters, vol.9, issue.2, pp.205-215, 1993.
DOI : 10.1271/bbb1961.53.2197
Biodegradation of Lignin, Biopolymers Online, 2005. ,
DOI : 10.1016/0014-5793(88)80534-9
Diversity of bacterial laccase-like multicopper oxidase genes in forest and grassland Cambisol soil samples, Soil Biology and Biochemistry, vol.40, issue.3, pp.638-686, 2008. ,
DOI : 10.1016/j.soilbio.2007.09.013
Engineering and Applications of fungal laccases for organic synthesis, Microbial Cell Factories, vol.7, issue.1, pp.32-42, 2008. ,
DOI : 10.1186/1475-2859-7-32
Dynamic Changes in Bacterial Communities During Compost and Earthworm Treatment of Low-Grade Potassium Ore, Geomicrobiology Journal, vol.20, issue.7, pp.653-61, 2013. ,
DOI : 10.1016/j.jhazmat.2006.08.003
Diversity of laccase genes from basidiomycetes in a forest soil, Soil Biology and Biochemistry, vol.36, issue.7, pp.1025-1061, 2004. ,
DOI : 10.1016/j.soilbio.2004.02.017
ABSTRACT, Applied and Environmental Microbiology, vol.80, issue.11, pp.3305-141000223, 1128. ,
DOI : 10.1128/AEM.00223-14
Laccase engineering: From rational design to directed evolution, Biotechnology Advances, vol.33, issue.1, pp.25-40, 2015. ,
DOI : 10.1016/j.biotechadv.2014.12.007
URL : https://digital.csic.es/bitstream/10261/174137/1/2015-BiotechAdv.pdf
Actinobacterial Peroxidases: an Unexplored Resource for Biocatalysis, Applied Biochemistry and Biotechnology, vol.38, issue.1, pp.681-713, 2011. ,
DOI : 10.1007/s12033-007-0035-z
sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase omega class, FEBS Letters, vol.420, issue.22, pp.3944-50, 2012. ,
DOI : 10.1016/j.jmb.2012.04.014
URL : https://hal.archives-ouvertes.fr/hal-01268258
Features of promising technologies for pretreatment of lignocellulosic biomass, Bioresource Technology, vol.96, issue.6, pp.673-86, 2005. ,
DOI : 10.1016/j.biortech.2004.06.025
Molecular Characterization of a Novel Peroxidase from the Cyanobacterium Anabaena sp. Strain PCC 7120, Applied and Environmental Microbiology, vol.75, issue.23, pp.7509-7527, 2009. ,
DOI : 10.1128/AEM.01121-09
PeroxiBase: The peroxidase database, Phytochemistry, vol.68, issue.12, pp.1605-1616, 2007. ,
DOI : 10.1016/j.phytochem.2007.04.005
URL : https://hal.archives-ouvertes.fr/hal-01999868
at 1.90-?? Resolution Containing a Full Complement of Coppers, Journal of Biological Chemistry, vol.205, issue.40, pp.37663-69, 2002. ,
DOI : 10.1016/0022-2836(88)90129-5
Characterisation of Dyp-type peroxidases from Pseudomonas fluorescens Pf-5: Oxidation of Mn(II) and polymeric lignin by Dyp1B, Archives of Biochemistry and Biophysics, vol.574, pp.93-98, 2015. ,
DOI : 10.1016/j.abb.2014.12.022
The Laccase Engineering Database: A Classification and Analysis System for Laccases and Related Multicopper Oxidases, Genomics of Cellulosic Biofuels Nature Database, vol.454, issue.7206, pp.841-886, 2008. ,
Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application, PLoS ONE, vol.10, issue.5, 2011. ,
DOI : 10.1371/journal.pone.0098420.s007
Laccase from prokaryotes: a new source for an old enzyme, Reviews in Environmental Science and Bio/Technology, vol.47, issue.3, pp.309-335, 2011. ,
DOI : 10.1007/BF02817651
The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips, PLoS ONE, vol.70, issue.2, 2012. ,
DOI : 10.1371/journal.pone.0036740.s005
A structural and functional perspective of DyP-type peroxidase family, Archives of Biochemistry and Biophysics, vol.574, pp.49-55, 2015. ,
DOI : 10.1016/j.abb.2015.01.022