, II.1.1, p.20
, , p.20
,
, II.2.2. Composés aromatiques utilisés
, II.2.3. Mesures en
, II.2.4. Conditions d'incubation des microplaques et mesures au spectrophotomètre, p.22
, , p.22
, , p.23
, , p.23
, , p.24
, II.4.2. Mesure de minéralisation, p.24
, , p.25
, , p.25
, II.5.2 Echantillonnage et, p.26
, , p.26
, ., p.27
, III.1.2. Mesures, p.30
, , p.31
, , p.31
, III.2. 3. Mesures en, p.32
, , p.32
, , p.32
Relation absorbance/fluorescence pour les puits «, III.2. 4, p.33 ,
, , p.33
, , p.34
Une minéralisation rapide et une diminution de la diversité métabolique : cas du phtalate, du fluorène et du 9-fluorènone, IV.2.2, p.36 ,
Une minéralisation faible et une augmentation de la diversité métabolique : cas du Pyrène et du 1-hydroxy-2-naphtoate, IV.2.3. Une minéralisation rapide et une augmentation de la diversité métabolique, p.38 ,
, IV.2.5. Une absence de minéralisation : cas du, p.39
, , p.40
, , p.41
, , p.42
, , p.48
Transgenic plants for enhanced biodegradation and phytoremediation of organic xenobiotics, Biotechnology Advances, vol.27, issue.4, pp.474-488, 2009. ,
DOI : 10.1016/j.biotechadv.2009.04.002
Ultraviolet-visible and fluorescence spectral evidence of natural organic matter (NOM) changes along an estuarine salinity gradient, Estuaries, vol.36, issue.2, pp.296-310, 2004. ,
DOI : 10.4081/jlimnol.2003.41
Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil, Environmental Microbiology, vol.238, issue.9, pp.2577-2588, 2012. ,
DOI : 10.1111/j.1574-6968.2004.tb09779.x
Stress responses to polycyclic aromatic hydrocarbons in Arabidopsis include growth inhibition and hypersensitive response-like symptoms, Journal of Experimental Botany, vol.56, issue.421, pp.2983-94, 2005. ,
DOI : 10.1065/espr2003.04.150.1
Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions, Journal of Chemical Technology & Biotechnology, vol.91, issue.7, pp.723-736, 2005. ,
DOI : 10.1042/bj0910251
, , 2013.
, Remarkable impact of PAHs and TPHs on the richness and diversity of bacterial species in surface soils exposed to long-term hydrocarbon pollution, World Journal of Microbiology and Biotechnology, vol.29, issue.11, pp.1989-2002
The rhizosphere microbiome and plant health, Trends in Plant Science, vol.17, issue.8, pp.478-86, 2012. ,
DOI : 10.1016/j.tplants.2012.04.001
Inter-laboratory comparison of methods used for analysing polycyclic aromatic hydrocarbons (PAHs) in soil samples, Fresenius' Journal of Analytical Chemistry, vol.88, issue.6, pp.497-504, 1992. ,
DOI : 10.1007/BF00322157
Sleuthing out bacterial identities, Nature, vol.339, issue.6220, pp.157-158, 1989. ,
DOI : 10.1038/339157a0
Analytical opportunities of quantitative polymerase chain reaction in dairy microbiology, International Dairy Journal, vol.30, issue.1, pp.45-52, 2013. ,
DOI : 10.1016/j.idairyj.2012.11.008
Isolation and characterization of a 9 fluorenone-degrading bacterial strain and its role in synergistic degradation of fluorene by a consortium, Can. J. Microbiol, vol.44, pp.734-742, 1998. ,
New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101, Appl. Environ. Microbiol, vol.63, issue.1, pp.819-826, 1997. ,
Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates, Environmental Microbiology, vol.65, issue.3, pp.722-736, 2011. ,
DOI : 10.1007/s00253-004-1614-6
Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHD??) genes from Gram positive and Gram negative bacteria in soil and sediment samples, Journal of Microbiological Methods, vol.73, issue.2, pp.148-159, 2008. ,
DOI : 10.1016/j.mimet.2008.01.009
Microbial degradation of polycyclic aromatic hydrocarbons (PAH) in the aquatic environment, pp.41-68, 1989. ,
Microcalorimetric investigation of the effect of non-ionic surfactant on biodegradation of pyrene by PAH-degrading bacteria Burkholderia cepacia, Ecotoxicology and Environmental Safety, vol.98, pp.361-367, 2013. ,
DOI : 10.1016/j.ecoenv.2013.08.012
Fluorescence Spectroscopy Reveals Ubiquitous Presence of Oxidized and Reduced Quinones in Dissolved Organic Matter, Environmental Science & Technology, vol.39, issue.21, pp.8142-8149, 2005. ,
DOI : 10.1021/es0506962
The kinetics of cometabolism, Biotechnology and Bioengineering, vol.54, issue.11, pp.1048-1056, 1993. ,
DOI : 10.1111/j.1574-6968.1979.tb03329.x
Metabolism of Xenobiotics in the Rhizosphere. Pesticide Biotransformation in Plants and Microorganisms, pp.333-352, 2000. ,
DOI : 10.1021/bk-2001-0777.ch018
: Evidence from Comparative Genomics and Isolated Pyrene-Degrading Bacteria, Environmental Science & Technology, vol.46, issue.1, pp.99-106, 2012. ,
DOI : 10.1021/es201607y
Effect of Aerosol Chemical Composition on the Photodegradation of Nitro-polycyclic Aromatic Hydrocarbons, Environmental Science & Technology, vol.34, issue.5, pp.789-797, 2000. ,
DOI : 10.1021/es990566r
Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs), Journal of Hazardous Materials, vol.172, issue.2-3, pp.2-3, 2009. ,
DOI : 10.1016/j.jhazmat.2009.07.118
Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbone-source utilization, Appl. And Environ. Microbiol, vol.57, pp.2351-2359, 1991. ,
Genetics of Polycyclic Aromatic Hydrocarbon Metabolism in Diverse Aerobic Bacteria, Bioscience, Biotechnology, and Biochemistry, vol.67, issue.2, pp.225-243, 2003. ,
DOI : 10.1271/bbb.67.225
Biodegradation aspects of Polycyclic Aromatic Hydrocarbons (PAHs): A review, Journal of Hazardous Materials, vol.169, issue.1-3, pp.1-15, 2009. ,
DOI : 10.1016/j.jhazmat.2009.03.137
Polycyclic Aromatic Hydrocarbons: Chemistry and Carcinogenicity, 1991. ,
Ue ber neuere Erfahrungen und Probleme auf dem Gebiet der Bodenbackteriologie und unter besonderer BeruÈcksichtigung der GruÈnduÈngung und Brache, ArbeitenDeutscher Landwirtschafts Gesellschaft, vol.98, pp.59-78, 1904. ,
Enrichment, Isolation, and Phylogenetic Identification of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria from Elizabeth River Sediments, Applied and Environmental Microbiology, vol.74, issue.4, pp.1176-1182, 2008. ,
DOI : 10.1128/AEM.01518-07
URL : http://aem.asm.org/content/74/4/1176.full.pdf
, , 1995.
, Phytoremediation of organic and nutrient contaminants, Environ. Sci. Technol, vol.29, issue.7, pp.318-323
Biodegradation of phenanthrene using adapted microbial consortium isolated from petrochemical contaminated environment, Journal of Hazardous Materials, vol.187, issue.1-3, pp.333-340, 2011. ,
DOI : 10.1016/j.jhazmat.2011.01.034
Principles of microbial PAH-degradation in soil, Environmental Pollution, vol.133, issue.1, pp.71-84, 2005. ,
DOI : 10.1016/j.envpol.2004.04.015
Rhizosphere Effects on Microbial Community Structure and Dissipation and Toxicity of Polycyclic Aromatic Hydrocarbons (PAHs) in Spiked Soil, Environmental Science & Technology, vol.35, issue.13, pp.2773-2777, 2001. ,
DOI : 10.1021/es000288s
A complementary approach to identifying and assessing the remediation potential of hydrocarbonoclastic bacteria, Journal of Microbiological Methods, vol.88, issue.3, pp.348-355, 2012. ,
DOI : 10.1016/j.mimet.2011.12.006
ES&T Special Report: Priority pollutants: I-a perspective view, Environmental Science & Technology, vol.13, issue.4, pp.416-423, 1979. ,
DOI : 10.1021/es60152a601
Principles of Fluorescence Spectroscopy, 2007. ,
The development of phenanthrene catabolism in soil amended with transformer oil, FEMS Microbiology Letters, vol.60, issue.2, pp.217-240, 2003. ,
DOI : 10.1016/0038-0717(84)90030-0
, ) Pollutions organiques agricoles, urbaines ou industrielles : Cas des hydrocarbures aromatiques polycycliques. Chapitre 19 in Sols et environnement. DUNOD, p.816, 2005.
Rhizosphere effects of PAHcontaminated soil phytoremediation using a special plant named Fire Phoenix, Science of The Total Environment, pp.473-474, 2014. ,
Bacteria-mediated PAH degradation in soil and sediment, Applied Microbiology and Biotechnology, vol.14, issue.2, pp.1357-71, 2011. ,
DOI : 10.1080/10020070412331344601
Sources, Fate, and Toxic Hazards of Oxygenated Polycyclic Aromatic Hydrocarbons (PAHs) at PAH- contaminated Sites, AMBIO: A Journal of the Human Environment, vol.36, issue.6, pp.475-485, 2007. ,
DOI : 10.1579/0044-7447(2007)36[475:SFATHO]2.0.CO;2
Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene, Environmental Pollution, vol.162, pp.345-53, 2011. ,
DOI : 10.1016/j.envpol.2011.11.032
URL : https://hal.archives-ouvertes.fr/hal-01063697
Partitioning and Physical Chemical Properties of PAHs. The Handbook of Environmental Chemistry, pp.325-345, 1998. ,
Anaerobic degradation of non-substituted aromatic hydrocarbons, Current Opinion in Biotechnology, vol.22, issue.3, pp.406-414, 2011. ,
DOI : 10.1016/j.copbio.2011.02.009
Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil, Environmental Microbiology, vol.238, issue.9, pp.2577-88, 2012. ,
DOI : 10.1111/j.1574-6968.2004.tb09779.x
Microbial Degradation of Dibenzofuran, Fluorene, and Dibenzo-p-Dioxin by Staphylococcus auriculans DBF63, Appl Environ Microbiol, vol.59, issue.1, pp.285-289, 1993. ,
Estimated IR and phosphorescence emission fluxes for
specific polycyclic aromatic hydrocarbons in the Red Rectangle, Astronomy & Astrophysics, vol.274, issue.2, p.537, 2006. ,
DOI : 10.1126/science.274.5287.582
URL : https://hal.archives-ouvertes.fr/hal-00013392
Phytotoxicities of fluoranthene and phenanthrene deposited on needle surfaces of the evergreen conifer, Japanese red pine (Pinus densiflora Sieb. et Zucc.) Environmental Pollution, pp.1542-264, 2008. ,
bioremediation, FEMS Microbiology Reviews, vol.56, issue.(suppl 1), pp.324-375, 2009. ,
DOI : 10.1016/j.aca.2007.11.018
Microbial biodegradation of polyaromatic hydrocarbons, FEMS Microbiology Reviews, vol.32, issue.6, pp.927-955, 2008. ,
DOI : 10.1007/978-1-4615-5925-2_14
Réactivité des hydrocarbures aromatiques polycycliques (HAP) adsorbés sur des particules modèles d'intérêt atmosphérique : mesures cinétiques, développements analytiques et analyse des produits d'oxydation, Thèse de Doctorat en sciences chimiques, 2004. ,
Going back to the roots: the microbial ecology of the rhizosphere, Nature Reviews Microbiology, vol.4, issue.11, pp.789-799, 2013. ,
DOI : 10.1016/j.soilbio.2012.12.004
The effects of polycyclic aromatic hydrocarbons on the immune system of fish: A review, Aquatic Toxicology, vol.77, issue.2, pp.229-238, 2006. ,
DOI : 10.1016/j.aquatox.2005.10.018
URL : https://hal.archives-ouvertes.fr/halsde-00295430
Remediating polluted soils, Naturwissenschaften, vol.38, issue.2, pp.51-56, 2006. ,
DOI : 10.1139/a96-011
Toxicity of fluoranthene and its biodegradation metabolites to aquatic organisms, Chemosphere, vol.52, issue.7, pp.1125-1133, 2003. ,
DOI : 10.1016/S0045-6535(03)00321-7
Secondary plant metabolites in phytoremediation and biotransformation, Trends in Biotechnology, vol.21, issue.3, pp.123-153, 2003. ,
DOI : 10.1016/S0167-7799(02)00041-0
Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil, Environmental Microbiology, vol.22, issue.10, pp.1736-1745, 2006. ,
DOI : 10.1128/AEM.71.4.1946-1952.2005
Soil microbial diversity and activity in a Mediterranean olive orchard using sustainable agricultural practices. Soil Use and Management, pp.160-167, 2014. ,
Adaptation of natural microbial communities to degradation of xenobiotic compounds: effects of concentration, exposure time, inoculum and chemical structure, Applied and Environmental Microbiology, vol.45, pp.428-435, 1983. ,
Soil microbial toxicity of eight polycyclic aromatic compounds: Effects on nitrification, the genetic diversity of bacteria, and the total number of protozoans, Environmental Toxicology and Chemistry, vol.31, issue.8, pp.1644-50, 2002. ,
DOI : 10.1002/etc.5620210116
A phenanthrene-degrading strain Sphingomonas sp. GY2B isolated from contaminated soils, Process Biochemistry, vol.42, issue.3, pp.401-408, 2007. ,
DOI : 10.1016/j.procbio.2006.09.018
Influence des interactions Bactéries-Champignons sur la dissipation des HAPs dans la rhizosphère, Thèse de Doctorat de l, 2012. ,
, , 2013.
, Stable isotope probing in the metagenomics era: A bridge towards improved bioremediation, Biotechnology Advances, vol.31, issue.2, pp.154-165
Biodegradation of polycyclic aromatic hydrocarbons in forest and salt marsh soils by white-rot fungi, International Biodeterioration & Biodegradation, vol.58, issue.1, pp.15-21, 2006. ,
DOI : 10.1016/j.ibiod.2006.04.002
State of research: Environmental pathways and food chain transfer. Health Perspectives, pp.353-371, 1983. ,
Effect of micro-organisms on the bioavailability and biodegradation of crystalline naphthalene, Applied Microbiology and Biotechnology, vol.40, issue.4, pp.535-540, 1993. ,
DOI : 10.1007/BF00175745
SYNOPSIS Polycyclic Aromatic Hydrocarbons (PAHs) in Soil ??? a Review, Journal of Plant Nutrition and Soil Science, vol.163, issue.3, pp.229-248, 2000. ,
DOI : 10.1002/1522-2624(200006)163:3<229::AID-JPLN229>3.0.CO;2-6
Isolation and characterization of phenanthrene-degrading Sphingomonas paucimobilis strain ZX4, Biodegradation, vol.34, issue.8, pp.393-402, 2005. ,
DOI : 10.1007/s10532-004-2412-7
Corn (Zea mays L.) root exudates and their impact on 14C-pyrene mineralization, Soil Biology and Biochemistry, vol.33, issue.12-13, pp.1769-1776, 2001. ,
DOI : 10.1016/S0038-0717(01)00102-X
Isolation and Selection of a Highly Tolerant Microbial Consortium with Potential for PAH Biodegradation from Heavy Crude Oil-Contaminated Soils, Water, Air, & Soil Pollution, vol.71, issue.3, p.1826, 2014. ,
DOI : 10.1007/s00128-003-8841-x
Naphthalene metabolism in Nocardia otitidiscaviarum strain TSH1, a moderately thermophilic microorganism, Chemosphere, vol.72, issue.6, pp.905-909, 2008. ,
DOI : 10.1016/j.chemosphere.2008.03.038