Taxonomy, physiology, and natural products of Actinobacteria, Microbiol Mol Biol Rev, vol.80, pp.1-43, 2016. ,
Streptomyces: implications and interactions in plant growth promotion, Appl Microbiol Biotechnol, vol.103, pp.1179-1188, 2019. ,
Genome mining of Streptomyces ambofaciens, J Ind Microbiol Biotechnol, vol.41, pp.251-263, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01475037
Gifted microbes for genome mining and natural product discovery, J Ind Microbiol Biotechnol, vol.44, pp.573-588, 2017. ,
Evolution of the terminal regions of the Streptomyces linear chromosome, Mol Biol Evol, vol.23, pp.2361-2369, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00112247
A set of ordered cosmids and a detailed genetic and physical map for the 8, 1996. ,
, Mol Microbiol, vol.21, pp.77-96
Comparative genomics analysis of Streptomyces species reveals their adaptation to the marine environment and their diversity at the genomic level, Front Microbiol, vol.7, 2016. ,
Comparative genomics reveals the core and accessory genomes of Streptomyces species, J Microbiol Biotechnol, vol.25, pp.1599-1605, 2015. ,
Genome plasticity and systems evolution in Streptomyces, BMC Bioinformatics, vol.13, 2012. ,
The chromosomal DNA of Streptomyces lividans 66 is linear, Mol Microbiol, vol.10, pp.923-933, 1993. ,
The telomeres of Streptomyces chromosomes contain conserved palindromic sequences with potential to form complex secondary structures, Mol Microbiol, vol.28, pp.905-916, 1998. ,
Once the circle has been broken: dynamics and evolution of Streptomyces chromosomes, Trends Genet, vol.18, issue.02, p.2752, 2002. ,
Subtelomere plasticity in the bacterium Streptomyces, Louis EJ, Becker MM, pp.243-258, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01478830
Widespread homologous recombination within and between Streptomyces species, ISME J, vol.4, pp.1136-1143, 2010. ,
Lateral gene transfer and the nature of bacterial innovation, Nature, vol.405, pp.299-304, 2000. ,
Temperate phages of Streptomyces venezuelae: lysogeny and host specificity shown by phages SV1 and SV2, Microbiology, vol.128, pp.115-121, 1982. ,
Generalized transduction in Streptomyces coelicolor, Proc Natl Acad Sci, vol.98, pp.6289-6294, 2001. ,
Diversity of integrating conjugative elements in actinobacteria: coexistence of two mechanistically different DNA-translocation systems, Mob Genet Elements, vol.2, pp.119-124, 2012. ,
Conjugative DNA-transfer in Streptomyces, a mycelial organism, Plasmid, vol.87, pp.1-9, 2016. ,
Spreading the news about the novel conjugation mechanism in Streptomyces bacteria, Environ Microbiol Rep, vol.10, pp.503-510, 2018. ,
Lateral gene transfer dynamics in the ancient bacterial genus Streptomyces, vol.8, pp.644-661, 2017. ,
Multiple Streptomyces species with distinct secondary metabolomes have identical 16S rRNA gene sequences, Sci Rep, vol.7, p.11089, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01590493
Structure and evolution of Streptomyces interaction networks in soil and in silico, PLoS Biol, vol.9, 2011. ,
Comparative genomics among closely related Streptomyces strains revealed specialized metabolite biosynthetic gene cluster diversity, Antibiotics (Basel), vol.7, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01887213
Phylogenomics and comparative genomics of Lactobacillus salivarius, a mammalian gut commensal, Microb Genom, vol.3, 2017. ,
Within-species genomic variation and variable patterns of recombination in the tetracycline producer Streptomyces rimosus, Front Microbiol, vol.10, p.552, 2019. ,
Diversification of bacterial genome content through distinct mechanisms over different timescales, Nat Commun, vol.5, p.5471, 2014. ,
Vibrio cholerae genomic diversity within and between patients, Microb Genom, vol.3, 2017. ,
Function-related replacement of bacterial siderophore pathways, ISME J, vol.12, pp.320-329, 2018. ,
Kin discrimination between sympatric Bacillus subtilis isolates, Proc Natl Acad Sci U S A, vol.112, pp.14042-14047, 2015. ,
A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus, ISME J, vol.10, pp.2468-2477, 2016. ,
Micro-scale determinants of bacterial diversity in soil, FEMS Microbiol Rev, vol.37, pp.936-954, 2013. ,
Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria, PLoS One, vol.8, p.83661, 2013. ,
Spatial ecology of bacteria at the microscale in soil, PLoS One, vol.9, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01252483
Database resources of the National Center for Biotechnology Information, Nucleic Acids Res, vol.47, pp.23-28, 2019. ,
End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens, Mol Microbiol, vol.50, pp.411-425, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-01659028
Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens, Proc Natl Acad Sci U S A, vol.95, pp.14296-14301, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-01625341
Chromosomal arm replacement in Streptomyces griseus, J Bacteriol, vol.185, pp.1120-1124, 2003. ,
Efficiency of the transfer of a pSAM2-derivative plasmid between two strains of Streptomyces lividans in conditions ranging from agar slants to non-sterile soil microcosms, FEMS Microbiol Ecol, vol.21, pp.157-165, 1996. ,
Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene, Proc Natl Acad Sci U S A, vol.95, pp.5145-5149, 1998. ,
0-improvements in chemistry prediction and gene cluster boundary identification, Nucleic Acids Res, vol.45, pp.36-41, 2017. ,
Why prokaryotes have pangenomes, Nat Microbiol, vol.2, p.17040, 2017. ,
Genome plasticity is governed by double strand break DNA repair in Streptomyces, Sci Rep, vol.8, p.5272, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01757262
A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi, Mol Microbiol, vol.35, pp.490-516, 2002. ,
Distance from the chromosome end determines the efficiency of double strand break repair in subtelomeres of haploid yeast, J Mol Biol, vol.328, issue.03, pp.315-317, 2003. ,
Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication, Nature, vol.437, pp.94-100, 2005. ,
, , 2002.
, Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2), Nature, vol.417, pp.141-147
Comparative genomics of Streptomyces avermitilis, Streptomyces cattleya, Streptomyces maritimus and Kitasatospora aureofaciens using a Streptomyces coelicolor microarray system, Antonie Van Leeuwenhoek, vol.93, pp.1-25, 2008. ,
Soil to genomics: the Streptomyces chromosome, Annu Rev Genet, vol.40, pp.1-23, 2006. ,
Plasmids, recombination and chromosome mapping in Streptomyces lividans 66, J Gen Microbiol, vol.129, pp.2257-2269, 1983. ,
Distributive conjugal transfer in mycobacteria generates progeny with meioticlike genome-wide mosaicism, allowing mapping of a mating identity locus, PLoS Biol, vol.11, 2013. ,
Distributive conjugal transfer: new insights into horizontal gene transfer and genetic exchange in mycobacteria, Microbiol Spectr, vol.2, pp.2-0022, 2014. ,
Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance, Science, vol.337, pp.1228-1231, 2012. ,
Socially mediated induction and suppression of antibiosis during bacterial coexistence, Proc Natl Acad Sci U S A, vol.112, pp.11054-11059, 2015. ,
Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities, Nat Commun, vol.8, p.414, 2017. ,
Sampling the antibiotic resistome, Science, vol.311, pp.374-377, 2006. ,
Practical Streptomyces genetics, John Innes Foundation, 2000. ,
NCBI prokaryotic genome annotation pipeline, Nucleic Acids Res, vol.44, pp.6614-6624, 2016. ,
Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2), Microbiology, vol.145, pp.2221-2227, 1999. ,
Conjugal transfer using the bacteriophage phiC31 att/int system and properties of the attB site in Streptomyces ambofaciens, Biotechnol Lett, vol.30, pp.695-699, 2008. ,
Pulsed-field gel electrophoresis analysis of the genome of Streptomyces ambofaciens strains, FEMS Microbiol Lett, vol.72, pp.79-88, 1990. ,
URL : https://hal.archives-ouvertes.fr/hal-01658692
PCR primers targeting the 16S rRNA gene for the specific detection of streptomycetes, Mol Cell Probes, vol.15, pp.337-347, 2001. ,
A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics, Int J Syst Evol Microbiol, vol.58, pp.149-159, 2008. ,
MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets, Mol Biol Evol, vol.33, pp.1870-1874, 2016. ,
Basic local alignment search tool, J Mol Biol, vol.215, issue.05, pp.80360-80362, 1990. ,
MUSCLE: a multiple sequence alignment method with reduced time and space complexity, BMC Bioinformatics, vol.5, p.113, 2004. ,
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments, Syst Biol, vol.56, pp.564-577, 2007. ,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, pp.1312-1313, 2014. ,
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities, Int J Syst Evol Microbiol, vol.57, pp.81-91, 2007. ,
Anvi'o: an advanced analysis and visualization platform for 'omics data, PeerJ, vol.3, 2015. ,
, mbio.asm.org, vol.10, pp.1533-1552, 2019.