A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis, Nature, vol.417, pp.967-970, 2002. ,
The molecular weights of yeast ribosomal precursor RNAs, Mol. Biol. Rep, vol.2, pp.321-325, 1975. ,
Ribosome biogenesis: of knobs and RNA processing, Exp. Cell Res, vol.296, pp.43-50, 2004. ,
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs, EMBO J, vol.20, pp.3617-3622, 2001. ,
Guiding ribose methylation of rRNA, Trends Biochem. Sci, vol.22, pp.257-261, 1997. ,
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs, Cell, vol.89, pp.799-809, 1997. ,
Depletion of U3 small nucleolar RNA inhibits cleavage in the 5 external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA, EMBO J, vol.10, pp.4231-4239, 1991. ,
Small nucleolar RNA, Biochem. Cell Biol. Biochim. Biol. Cell, vol.73, pp.845-858, 1995. ,
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis, EMBO J, vol.14, pp.4350-4356, 1995. ,
A second base pair interaction between U3 small nucleolar RNA and the 5 -ETS region is required for early cleavage of the yeast pre-ribosomal RNA, Nucleic Acids Res, vol.39, pp.9731-9745, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02646318
cDNA cloning and characterization of the human U3 small nucleolar ribonucleoprotein complex-associated 55-kilodalton protein, Mol. Cell Biol, vol.18, pp.488-498, 1998. ,
Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association, RNA, vol.6, pp.1660-1671, 2000. ,
Analysis of sequence and structural features that identify the B/C motif of U3 small nucleolar RNA as the recognition site for the Snu13p-Rrp9p protein pair, Mol. Cell Biol, vol.27, pp.1191-1206, 2007. ,
Interaction of the U3-55k protein with U3 snoRNA is mediated by the box B/C motif of U3 and the WD repeats of U3-55k, Nucleic Acids Res, vol.28, pp.3462-3471, 2000. ,
Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex, Mol. Cell, vol.16, pp.789-798, 2004. ,
Small molecular weight monodisperse nuclear RNA, J. Mol. Biol, vol.38, pp.289-304, 1968. ,
Mutational analysis of an essential binding site for the U3 snoRNA in the 5 external transcribed spacer of yeast pre-rRNA, Nucleic Acids Res, vol.22, pp.4057-4065, 1994. ,
A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP, Cell, vol.103, pp.457-466, 2000. ,
URL : https://hal.archives-ouvertes.fr/hal-01704615
A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA, RNA, vol.9, pp.821-838, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-02680172
The hU3-55K protein requires 15.5K binding to the box B/C motif as well as flanking RNA elements for its association with the U3 small nucleolar RNA in vitro, J. Biol. Chem, vol.277, pp.48490-48500, 2002. ,
A weak C' box renders U3 snoRNA levels dependent on hU3-55K binding, Mol. Cell. Biol, vol.31, pp.2404-2412, 2011. ,
The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2, Cell, vol.83, pp.1047-1058, 1995. ,
Solution structure of the Kluyveromyces lactis LAC9 Cd2 Cys6 DNA-binding domain, Nat. Struct. Biol, vol.2, pp.898-905, 1995. ,
Architecture of the yeast small subunit processome, Science, vol.355, p.1880, 2017. ,
The WD repeat: a common architecture for diverse functions, Trends Biochem. Sci, vol.24, pp.181-185, 1999. ,
Structural and functional analysis of the U3 snoRNA binding protein Rrp9, RNA, vol.19, pp.701-711, 2013. ,
Structure of Utp21 tandem WD domain provides insight into the organization of the UTPB complex involved in ribosome synthesis, PLoS One, vol.9, p.86540, 2014. ,
, , 1997.
, 3867 structure-function analysis of the Saccharomyces cerevisiae U3A snoRNP: protein-RNA contacts and base-pair interaction with the pre-ribosomal RNA, Nucleic Acids Research, vol.48, issue.7, pp.552-571, 2020.
Base pairing between U3 small nucleolar RNA and the 5 end of 18S rRNA is required for pre-rRNA processing, Mol. Cell Biol, vol.19, pp.6012-6019, 1999. ,
The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing, Nucleic Acids Res, vol.39, pp.5164-5180, 2011. ,
Xenopus U3 snoRNA docks on pre-rRNA through a novel base-pairing interaction, RNA N Y N, vol.10, pp.942-953, 2004. ,
An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA, Nucleic Acids Res, vol.33, pp.4995-5005, 2005. ,
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA, EMBO J, vol.11, pp.1531-1542, 1992. ,
Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA, J. Mol. Biol, vol.259, pp.645-654, 1996. ,
Ribosome biogenesis: role of small nucleolar RNA in maturation of eukaryotic rRNA, Cold Spring Harb. Symp. Quant. Biol, vol.66, pp.575-590, 2001. ,
Xenopus U3 snoRNA GAC-Box A' and Box A sequences play distinct functional roles in rRNA processing, Mol. Cell Biol, vol.21, pp.6210-6221, 2001. ,
The small subunit processome in ribosome biogenesis--progress and prospects, Rev. RNA, vol.2, pp.1-21, 2011. ,
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors, Mol. Cell, vol.10, pp.105-115, 2002. ,
The small-subunit processome is a ribosome assembly intermediate, Eukaryot Cell, vol.3, pp.1619-1626, 2004. ,
The complete structure of the small-subunit processome, Nat. Struct. Mol. Biol, vol.24, pp.944-953, 2017. ,
Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis, Nat. Struct. Mol. Biol, vol.22, pp.920-923, 2015. ,
Architecture of the 90S Pre-ribosome: A structural view on the birth of the eukaryotic ribosome, Cell, vol.166, pp.380-393, 2016. ,
2017) 3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage, Nat. Struct. Mol. Biol, vol.24, pp.954-964 ,
, , 2017.
Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast, Genes Dev, vol.30, pp.718-732, 2016. ,
Evolutionarily conserved function of RRP36 in early cleavages of the pre-rRNA and production of the 40S ribosomal subunit, Mol. Cell Biol, vol.30, pp.1130-1144, 2010. ,
The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation, Proc. Natl. Acad. Sci. U.S.A, vol.103, pp.9464-9469, 2006. ,
2015) hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0, RNA Biol, vol.12, pp.1010-1029 ,
The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans, Nucleic Acids Res, vol.44, pp.5399-5409, 2016. ,
High-definition macromolecular composition of yeast RNA-processing complexes, Mol. Cell, vol.13, pp.225-239, 2004. ,
Functional characterization of Pwp2, a WD family protein essential for the assembly of the 90 S pre-ribosomal particle, J. Biol. Chem, vol.279, pp.37385-37397, 2004. ,
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism, Mol. Cell Biol, vol.27, pp.5414-5429, 2007. ,
Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes, Nucleic Acids Res, vol.39, pp.8105-8121, 2011. ,
The nuclear poly(A) polymerase and exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance, RNA, vol.15, pp.406-419, 2009. ,
Conformational switches control early maturation of the eukaryotic small ribosomal subunit. eLife, vol.8, p.45185, 2019. ,
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective, Microbiol. Rev, vol.58, pp.10-26, 1994. ,
Compilation of small ribosomal subunit RNA structures, Nucleic Acids Res, vol.21, pp.3025-3049, 1993. ,
Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast, Mol. Cell Biol, vol.17, pp.5803-5812, 1997. ,
Two-hybrid Mpp10p interaction-defective Imp4 proteins are not interaction defective in vivo but do confer specific pre-rRNA processing defects in Saccharomyces cerevisiae, Nucleic Acids Res, vol.32, pp.1404-1413, 2004. ,
An unexpected, conserved element of the U3 snoRNA is required for Mpp10p association, RNA, vol.7, pp.904-919, 2001. ,
Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing, Mol. Cell Biol, vol.19, pp.5441-5452, 1999. ,
Imp3 unfolds stem structures in pre-rRNA and U3 snoRNA to form a duplex essential for small subunit processing, RNA, vol.19, pp.1372-1383, 2013. ,
Imp3p and Imp4p mediate formation of essential U3-precursor rRNA (pre-rRNA) duplexes, 2004. ,
, Proc. Natl. Acad. Sci. U.S.A, vol.101, pp.15301-15306
Deciphering correct strategies for multiprotein complex assembly by co-expression: application to complexes as large as the histone octamer, J. Struct. Biol, vol.175, pp.178-188, 2011. ,
The ADE2 gene from Saccharomyces cerevisiae: sequence and new vectors, Gene, vol.95, pp.91-98, 1990. ,
Improved method for high efficiency transformation of intact yeast cells, Nucleic Acids Res, vol.20, p.1425, 1992. ,
An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution, Nucleic Acids Res, vol.20, pp.3443-3451, 1992. ,
The gapped duplex DNA approach to oligonucleotide-directed mutation construction, Nucleic Acids Res, vol.12, pp.9441-9456, 1984. ,
RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles, Nucleic Acids Res, vol.38, p.113, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01716044
Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency, RNA, vol.2, pp.1079-1093, 1996. ,
Characterization of the interaction between protein Snu13p/15.5K and the Rsa1p/NUFIP factor and demonstration of its functional importance for snoRNP assembly, Nucleic Acids Res, vol.42, pp.2015-2036, 2014. ,
Alcoholic precipitation of small non-coding RNAs, Methods Mol. Biol, vol.1296, pp.11-16, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02271766
Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae, Mol. Cell Biol, vol.13, pp.7935-7941, 1993. ,
Assembling a protein-protein interaction map of the SSU processome from existing datasets, PLoS One, vol.6, p.17701, 2011. ,
) An in vivo map of the yeast protein interactome, Science, vol.320, pp.1465-1470, 2008. ,
The SSU processome interactome in Saccharomyces cerevisiae reveals novel protein subcomplexes, RNA, vol.24, pp.77-89, 2018. ,
The DEAD-box protein Rok1 orchestrates 40S and 60S ribosome assembly by promoting the release of Rrp5 from Pre-40S ribosomes to allow for 60S maturation, PLoS Biol, vol.14, p.1002480, 2016. ,
Scalable web services for the PSIPRED protein analysis workbench, Nucleic Acids Res, vol.41, pp.349-357, 2013. ,
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content, Bioinforma Oxf. Engl, vol.21, pp.3433-3434, 2005. ,
The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis, Nucleic Acids Res, vol.47, pp.7548-7563, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02170772
Utp14 recruits and activates the RNA helicase Dhr1 To undock U3 snoRNA from the Preribosome, Mol. Cell Biol, vol.36, pp.965-978, 2016. ,
18S rRNA processing requires the RNA helicase-like protein Rrp3, Nucleic Acids Res, vol.24, pp.3201-3207, 1996. ,
Secondary structure conservation of the U3 small nucleolar RNA introns in Saccharomyces, C. R. Acad. Sci. III, vol.318, pp.1197-1206, 1995. ,
Implication of the box C/D snoRNP assembly factor Rsa1p in U3 snoRNP assembly, Nucleic Acids Res, vol.45, pp.7455-7473, 2017. ,
The spacing between functional cis-elements of U3 snoRNA is critical for rRNA processing, J. Mol. Biol, vol.300, pp.57-74, 2000. ,
Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation, RNA, vol.13, pp.1516-1527, 2007. ,
Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae. eLife, 6, e30189, 2017. ,