Current Nematode Threats to World Agriculture, Genomics and Molecular Genetics of Plant-Nematode Interactions, pp.21-43, 2011. ,
Vascularization and nutrient delivery at root-knot nematode feeding sites in host roots, J. Exp. Bot, vol.65, pp.1789-1798, 2014. ,
Root-knot Nematodes and Giant Cells, In Genomics and Molecular Genetics of Plant-Nematode Interactions, pp.83-100, 2011. ,
Poplar-Root Knot Nematode Interaction: A Model for Perennial Woody Species, Mol. Plant-Microbe Interact, vol.29, pp.560-572, 2016. ,
Overview of Root-Knot Nematodes and Giant Cells, Adv. Bot. Res, vol.73, pp.1-32, 2015. ,
Lignin biosynthesis and its integration into metabolism, Curr. Opin. Biotechnol, vol.56, pp.230-239, 2019. ,
Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis, Plant J, vol.44, pp.447-458, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02682347
Differential gene expression in Arabidopsis following infection by plant-parasitic nematodes Meloidogyne incognita and Heterodera schachtii, Mol. Plant Pathol, vol.8, pp.595-609, 2007. ,
Early transcriptomic events in microdissected Arabidopsis nematode-induced giant cells, Plant J, vol.61, pp.698-712, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-02663453
Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front ,
Distinct and conserved transcriptomic changes during nematode-induced giant cell development in tomato compared with Arabidopsis: a functional role for gene repression, New Phytol, vol.197, pp.1276-1290, 2013. ,
Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance res, Mol. Plant Pathol, vol.19, pp.615-633, 2018. ,
Analysis of gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways, BMC Genom, vol.12, 2011. ,
Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes, New Phytol, vol.194, pp.511-522, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02647583
Solanum torvum responses to the root-knot nematode Meloidogyne incognita ,
Gene expression analysis in Musa acuminata during compatible interactions with Meloidogyne incognita, Ann. Bot, vol.119, pp.915-930, 2017. ,
Host transcriptional profiling at early and later stages of the compatible interaction between Phaseolus vulgaris and Meloidogyne incognita, Phytopathology, vol.106, pp.282-294, 2016. ,
ClueGO: A Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks, Bioinformatics, vol.25, pp.1091-1093, 2009. ,
CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data, Bioinformatics, vol.29, pp.661-663, 2013. ,
Nematode feeding sites: unique organs in plant roots, Planta, vol.238, pp.807-818, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02648734
Plant Cell Wall Polysaccharides: Structure and Biosynthesis, Polysaccharides, pp.3-54, 2015. ,
The XTH Gene Family: An Update on Enzyme Structure, Function, and Phylogeny in Xyloglucan Remodeling, Plant Physiol, vol.153, pp.456-466, 2010. ,
Active gene expression of a xyloglucan endotransglucosylase/hydrolase gene, XTH9, in inflorescence apices is related to cell elongation in Arabidopsis thaliana, Plant Mol. Biol, vol.52, pp.473-482, 2003. ,
The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium, Plant Mol. Biol, vol.61, pp.917-932, 2006. ,
Xyloglucan and its Interactions with Other Components of the Growing Cell Wall, Plant Cell Physiol, vol.56, pp.180-194, 2015. ,
Chapter 5-Role of Plant Laccases in Lignin Polymerization, Advances in Botanical Research. Lignins Biosynthesis ,
URL : https://hal.archives-ouvertes.fr/hal-01203977
, , pp.65-2296, 2012.
The suppression of AtPrx52 affects fibers but not xylem lignification in Arabidopsis by altering the proportion of syringyl units, Physiol. Plant, vol.154, pp.395-406, 2014. ,
Comparative proteomic analysis of Populus trichocarpa early stem from primary to secondary growth, J. Proteom, vol.126, pp.94-108, 2015. ,
Knockdown of PCBER1, a gene of neolignan biosynthesis, resulted in increased poplar growth, Planta, vol.249, pp.515-525, 2019. ,
Characterization of Arabidopsis thaliana Pinoresinol Reductase, a New Type of Enzyme Involved in Lignan Biosynthesis, J. Biol. Chem, vol.283, pp.15550-15557, 2008. ,
Protein expression in tension wood formation monitored at high tissue resolution in Populus, J. Exp. Bot, vol.68, pp.3405-3417, 2017. ,
The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis, Plant J, vol.66, pp.387-400, 2011. ,
Expression divergence of cellulose synthase (CesA) genes after a recent whole genome duplication event in Populus, Planta, vol.241, pp.29-42, 2015. ,
Identifying New Components Participating in the Secondary Cell Wall Formation of Vessel Elements in Zinnia and Arabidopsis, Plant Cell, vol.21, pp.1155-1165, 2009. ,
Xylem development-From the cradle to the grave, New Phytol, vol.207, pp.519-535, 2015. ,
VASCULAR-RELATED NAC-DOMAIN6 (VND6) and VND7 Effectively Induce Transdifferentiation into Xylem Vessel Elements under Control of an Induction System, Plant Physiol, vol.153, pp.906-914, 2010. ,
Investigating the Role of Extensin Proteins in Poplar Biomass Recalcitrance, BioResources, vol.11, pp.4727-4744, 2016. ,
Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth, BMC Plant Biol, vol.15, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01204198
Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth, Plant Mol. Biol, vol.100, pp.151-161, 2019. ,
Changes in lignin biosynthesis and monomer composition in response to benzothiadiazole and root-knot nematode Meloidogyne incognita infection in tomato, J. Plant Physiol, vol.230, pp.40-50, 2018. ,
The Arabidopsis ATHB-8 HD-Zip Protein Acts as a Differentiation-Promoting Transcription Factor of the Vascular Meristems, Plant Physiol, vol.126, pp.643-655, 2001. ,
Transcriptional regulation in wood formation, Trends Plant Sci, vol.12, pp.64-70, 2007. ,
Members of the LATERAL ORGAN BOUNDARIES DOMAIN Transcription Factor Family Are Involved in the Regulation of Secondary Growth in Populus, Plant Cell, vol.22, pp.3662-3677, 2010. ,
Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation, Development, vol.137, pp.975-984, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00521639
ACAULIS5 controls Arabidopsis xylem specification through the prevention of premature cell death, vol.135, pp.2573-2582, 2008. ,
Wood Formation in Trees Is Increased by Manipulating PXY-Regulated Cell Division, Curr. Biol, vol.25, pp.1050-1055, 2015. ,
Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Populus trichocarpa, Plant Cell, vol.31, pp.602-626, 2019. ,
Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa, Planta, vol.245, pp.927-938, 2017. ,
Genetic manipulation of lignocellulosic biomass for bioenergy, Curr. Opin. Chem. Biol, vol.29, pp.32-39, 2015. ,
The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus, New Phytol, vol.194, pp.102-115, 2012. ,
Arabidopsis WEE1 Kinase Controls Cell Cycle Arrest in Response to Activation of the DNA Integrity Checkpoint, Plant Cell, vol.19, pp.211-225, 2007. ,
The Arabidopsis thaliana Checkpoint Kinase WEE1 Protects against Premature Vascular Differentiation during Replication Stress, Plant Cell, vol.23, pp.1435-1448, 2011. ,
The plant WEE1 kinase is involved in checkpoint control activation in nematode-induced galls, New Phytol, vol.225, pp.430-447, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02629362
KNOX genes: versatile regulators of plant development and diversity, Development, vol.137, pp.3153-3165, 2010. ,
BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 Interact and Regulate Secondary Cell Wall Formation via Repression of REVOLUTA, Plant Cell, vol.26, pp.4843-4861, 2014. ,
KNAT2/6b, a class I KNOX gene, impedes xylem differentiation by regulating NAC domain transcription factors in poplar, New Phytol, 2019. ,
Parasitic nematodes manipulate plant development to establish feeding sites, Curr. Opin. Microbiol, vol.46, pp.102-108, 2018. ,
XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem, Plant J, vol.53, pp.425-436, 2008. ,
XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED, New Phytol, vol.216, pp.76-89, 2017. ,
VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis, Plant Cell, vol.22, pp.1249-1263, 2010. ,
Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front ,
URL : https://hal.archives-ouvertes.fr/hal-01565043
LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis, Plant Physiol, vol.174, pp.1348-1358, 2017. ,
A Divergent Cellular Role for the FUSED Kinase Family in the Plant-Specific Cytokinetic Phragmoplast, Curr. Biol, vol.15, pp.2107-2111, 2005. ,
Genome-Wide Analysis of the Core DNA Replication Machinery in the Higher Plants Arabidopsis and Rice, Plant Physiol, vol.144, pp.1697-1714, 2007. ,
Divergent expression of cytokinin biosynthesis, signaling and catabolism genes underlying differences in feeding sites induced by cyst and root-knot nematodes, Plant J, vol.92, pp.211-228, 2017. ,
Cytokinin Signaling Networks, Annu. Rev. Plant Biol, vol.63, pp.353-380, 2012. ,
Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses, Plant J, vol.38, pp.203-214, 2004. ,
Phloem development in nematode-induced feeding sites: The implications of auxin and cytokinin, Front. Plant Sci, 2013. ,
Phytoparasitic nematode control of plant hormone pathways, Plant Physiol, vol.179, pp.1212-1226, 2019. ,
Ethylene Biosynthesis and Signaling Networks, Plant Cell, vol.14, pp.131-151, 2002. ,
Sclareol Induces Plant Resistance to Root-Knot Nematode Partially Through Ethylene-Dependent Enhancement of Lignin Accumulation, Mol. Plant-Microbe Interact, vol.28, pp.398-407, 2015. ,
Genetic Analysis Reveals That C19-GA 2-Oxidation Is a Major Gibberellin Inactivation Pathway in Arabidopsis ,
, Plant Cell, vol.20, pp.2420-2436, 2008.
GASA14 regulates leaf expansion and abiotic stress resistance by modulating reactive oxygen species accumulation, J. Exp. Bot, vol.64, pp.1637-1647, 2013. ,
A Century of Gibberellin Research, J. Plant Growth Regul, vol.34, pp.740-760, 2015. ,
Phytohormones and the cell wall in Arabidopsis during seedling growth, Trends Plant Sci, vol.15, pp.291-301, 2010. ,
A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice, Plant Cell, vol.27, pp.1681-1696, 2015. ,
Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression, Plant Cell, vol.13, pp.1527-1540, 2013. ,
How salicylic acid takes transcriptional control over jasmonic acid signaling, Front. Plant Sci, vol.6, 2015. ,
Salicylate-mediated suppression of jasmonate-responsive gene expression in Arabidopsis is targeted downstream of the jasmonate biosynthesis pathway, Planta, vol.232, pp.1423-1432, 2010. ,
The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade, Plant Cell, vol.23, pp.3089-3100, 2011. ,
Analysis of secondary growth in the Arabidopsis shoot reveals a positive role of jasmonate signalling in cambium formation, Plant J, vol.63, pp.811-822, 2010. ,
Jasmonic acid to boost secondary growth in hemp hypocotyl, Planta, vol.248, pp.1029-1036, 2018. ,
The Role of Plant Hormones in Nematode Feeding Cell Formation, In Genomics and Molecular Genetics of Plant-Nematode Interactions, pp.325-347, 2011. ,
Metabolomics reveals herbivore-induced metabolites of resistance and susceptibility in maize leaves and roots, Plant Cell Environ, vol.36, pp.621-639, 2013. ,
Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic Fungus Laccaria bicolor, Mol. Plant-Microbe Interact, vol.27, pp.546-556, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01268595
Laccase Down-Regulation Causes Alterations in Phenolic Metabolism and Cell Wall Structure in Poplar, Plant Physiol, vol.129, pp.145-155, 2002. ,
The Woody-Preferential Gene EgMYB88 Regulates the Biosynthesis of Phenylpropanoid-Derived Compounds in Wood, Front. Plant Sci, vol.7, p.319, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01477461
Phenolic glycosides of the Salicaceae and their role as anti-herbivore defenses, Phytochemistry, vol.72, pp.1497-1509, 2011. ,
Nematotoxic Phenolic Compounds from Melia azedarach Against Meloidogyne incognita, J. Agric. Food Chem, vol.60, pp.11675-11680, 2012. ,
Biosynthesis of Phenolic Glycosides from Phenylpropanoid and Benzenoid Precursors in Populus, J. Chem. Ecol, vol.36, pp.286-297, 2010. ,
Chlorogenic Acid Facilitates Root Hair Formation in Lettuce Seedlings, Plant Cell Physiol, vol.50, pp.504-514, 2009. ,
, Annu. Rev. Plant Biol, vol.54, pp.519-546, 2003.
Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus, New Phytol, vol.172, pp.47-62, 2006. ,
Evolution of rosmarinic acid biosynthesis, Phytochemistry, vol.70, pp.1663-1679, 2009. ,
, Salicylic Acid Biosynthesis and Metabolism. Arab. Book, vol.9, 2011.
Populus tremula × Populus alba RING-H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development, Plant J, vol.82, pp.978-990, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01167882
Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4-coumarate:CoA ligase specificity and redundancy, New Phytol, vol.208, pp.298-301, 2015. ,
Exploiting genome variation to improve next-generation sequencing data analysis and genome editing efficiency in Populus tremula × alba 717-1B4, Tree Genet. Genomes, vol.11, issue.11, 2015. ,
Linear Models for Microarray Data, In Statistics for Biology and Health ,
Genotype and time of day shape the Populus drought response, Plant J, vol.60, pp.703-715, 2009. ,
Vessel-specific reintroduction of CINNAMOYL-COA REDUCTASE1 (CCR1) in Dwarfed ccr1 mutants restores vessel and Xylary fiber integrity and increases biomass, Plant Physiol, vol.176, pp.611-633, 2018. ,
, This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license, © 2020 by the authors. Licensee MDPI