R. Steller, H. Bradshaw, . Jr, P. Heilman, and T. Hinckley, Biology of Populus and its implication for management and conservation, pp.7-32, 1996.

S. Casson and K. Lindsey, Genes and signalling in root development, New Phytologist, vol.156, issue.2, pp.11-38, 2003.
DOI : 10.1073/pnas.96.11.6529

A. Ahkami, Molecular physiology of adventitious root formation in Petunia hybrida cuttings: involvement of wound response and primary metabolism, New Phytologist, vol.198, issue.3, pp.613-625, 2009.
DOI : 10.1007/s003440000020

M. Aida, The PLETHORA Genes Mediate Patterning of the Arabidopsis Root Stem Cell Niche, Cell, vol.119, issue.1, pp.109-120, 2004.
DOI : 10.1016/j.cell.2004.09.018

J. Alonso, Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana, Science, vol.301, issue.5633, pp.653-657, 2003.
DOI : 10.1126/science.1086391

J. Bastien and N. Marron, Les systèmes dédiés à la production de bois d'énergie En France " travaux de recherche et projets En cours. Rev. for. Fr, 2011.

E. Benkova, Local, Efflux-Dependent Auxin Gradients as a Common Module for Plant Organ Formation, Cell, vol.115, issue.5, pp.591-602, 2003.
DOI : 10.1016/S0092-8674(03)00924-3

T. Berleth and T. Sachs, Plant morphogenesis: long-distance coordination and local patterning, Current Opinion in Plant Biology, vol.4, issue.1, pp.57-62, 2001.
DOI : 10.1016/S1369-5266(00)00136-9

I. Blilou, The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots, Nature, vol.125, issue.7021, pp.39-44, 2005.
DOI : 10.1046/j.1365-313X.2003.01705.x

W. Boerjan, superroot, a Recessive Mutation in Arabidopsis, Confers Auxin Overproduction, THE PLANT CELL ONLINE, vol.7, issue.9, pp.1405-1419, 1995.
DOI : 10.1105/tpc.7.9.1405

M. Bollmark, L. Eliasson, . Effects, . Exogenous, . On-root-formation et al., Effects of exogenous cytokinins on root formation in pea cuttings, Physiologia Plantarum, vol.71, issue.4, pp.662-666, 1986.
DOI : 10.1016/S0044-328X(76)80012-8

K. Boutilier, Ectopic Expression of BABY BOOM Triggers a Conversion from Vegetative to Embryonic Growth, THE PLANT CELL ONLINE, vol.14, issue.8, pp.1737-1749, 2002.
DOI : 10.1105/tpc.001941

P. Bonduelle, Poplar silviculture in short rotation coppices. Biomass production, Informations-­Foret, pp.1-39, 1989.

M. Brinker, Microarray Analyses of Gene Expression during Adventitious Root Development in Pinus contorta, PLANT PHYSIOLOGY, vol.135, issue.3, pp.1526-1539, 2004.
DOI : 10.1104/pp.103.032235

V. Busov, An auxin-inducible gene from loblolly pine ( Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein, Planta, vol.218, issue.6, pp.916-927, 2004.
DOI : 10.1007/s00425-003-1175-4

V. Busov, Y. Yordanov, and R. Meilan, Adventitious root formation of forest trees and horticultural plants-from genes to applications, pp.85-104, 2009.

V. Busov, S. Strauss, and G. Pilate, Genetics and genomics of populus, pp.113-134, 2010.

I. Casimiro, Auxin Transport Promotes Arabidopsis Lateral Root Initiation, THE PLANT CELL ONLINE, vol.13, issue.4, pp.843-852, 2001.
DOI : 10.1105/tpc.13.4.843

S. Cho, M. Ryu, C. Song, J. Kwak, and W. Kim, Arabidopsis PUB22 and PUB23 Are Homologous U-Box E3 Ubiquitin Ligases That Play Combinatory Roles in Response to Drought Stress, THE PLANT CELL ONLINE, vol.20, issue.7, pp.1899-1914, 2008.
DOI : 10.1105/tpc.108.060699

D. Clark, E. Gubrium, J. Barrett, T. Nell, and H. Klee, Root Formation in Ethylene-Insensitive Plants, Plant Physiology, vol.121, issue.1, pp.53-59, 1999.
DOI : 10.1104/pp.121.1.53

W. Coleman, T. Huxter, D. Reid, T. Thorpe, . Ethylene et al., Ethylene as an endogenous inhibitor of root regeneration in tomato leaf discs cultured in vitro, Physiologia Plantarum, vol.5, issue.4, pp.519-525, 1980.
DOI : 10.1146/annurev.pp.20.060169.002545

M. Confaloneieri, A. Balestrazzi, S. Bosoffi, and D. Carbonera, In vitro culture and genetic engineering of Populus spp : Synergy for forest tree improvment, Plant Cell, Tissue and Organ Culture, vol.72, issue.2, pp.109-138, 2003.
DOI : 10.1023/A:1022265504775

M. Delarue, E. Prinsen, H. Van-onckelen, M. Caboche, and C. Bellini, Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis, The Plant Journal, vol.254, issue.5, pp.603-611, 1998.
DOI : 10.1126/science.254.5034.998

P. Doerner, Plant stem cells: The only constant thing is change, Current Biology, vol.10, issue.22, pp.826-829, 2000.
DOI : 10.1016/S0960-9822(00)00791-0

A. Dowkiw, « l'analyse génétique de la résistance et de la tolérance des peupliers hybrides aux rouilles, 2003.

L. Dubois, V. Dpd, and D. De-vries, The effect of cytokinin and auxin on the sprouting and rooting of 'Amanda' rose softwood cuttings, Acta Horticulturae, vol.226, pp.455-464, 1988.

J. Eckenwalder, R. Steller, H. Bradshaw, . Jr, P. Heilman et al., Biology of Populus and its implication for management and conservation, pp.7-32, 1996.

R. Elliott, AINTEGUMENTA, an APETALA2-like Gene of Arabidopsis with Pleiotropic Roles in Ovule Development and Floral Organ Growth, THE PLANT CELL ONLINE, vol.8, issue.2, pp.155-168, 1996.
DOI : 10.1105/tpc.8.2.155

F. Ermel, Mechanisms of primordium formation during adventitious root development from walnut cotyledon explants, Planta, vol.211, issue.4, pp.563-574, 2000.
DOI : 10.1007/s004250000314

J. Felten, The Ectomycorrhizal Fungus Laccaria bicolor Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling, PLANT PHYSIOLOGY, vol.151, issue.4, pp.1991-2005, 2009.
DOI : 10.1104/pp.109.147231

J. Friml and K. Palme, Polar auxin transport ??? old questions and new concepts?, Plant Molecular Biology, vol.49, pp.3-4273, 2002.
DOI : 10.1007/978-94-010-0377-3_2

C. Galinha, PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development, Nature, vol.108, issue.7165, pp.1053-1057, 2007.
DOI : 10.1038/415751a

J. Guerrero, G. Garrido, M. Acosta, and J. Sanchez-bravo, Influence of 2,3,5-Triiodobenzoic Acid and 1-N-Naphthylphthalamic Acid on Indoleacetic Acid Transport in Carnation Cuttings: Relationship with Rooting, Journal of Plant Growth Regulation, vol.18, issue.4, pp.183-190, 1999.
DOI : 10.1007/PL00007068

L. Gutierrez, Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance, The Plant Cell, vol.21, issue.10, pp.3119-3132, 2009.
DOI : 10.1105/tpc.108.064758

D. Hao, M. Ohme-takagi, and A. Sarai, Unique Mode of GCC Box Recognition by the DNA-binding Domain of Ethylene-responsive Element-binding Factor (ERF Domain) in Plant, Journal of Biological Chemistry, vol.16, issue.41, pp.26857-26861, 1998.
DOI : 10.1105/tpc.6.9.1211

J. Hausman, C. Kevers, T. Gaspar, . Auxin-polyamine, I. Interaction et al., Auxin-polyamine interaction in the control of the rooting inductive phase of poplar shoots in vitro, Plant Science, vol.110, issue.1, pp.63-71, 1995.
DOI : 10.1016/0168-9452(95)04193-X

M. Heloir, C. Kevers, J. Hausman, and T. Gaspar, Changes in the concentrations of auxins and polyamines during rooting of in-vitro-propagated walnut shoots, Tree Physiology, vol.16, issue.5, pp.515-519, 1996.
DOI : 10.1093/treephys/16.5.515

J. Herr, Bioenergy from trees, New Phytologist, vol.329, issue.2, pp.313-315, 2011.
DOI : 10.1126/science.1189003

Y. Hu, Y. Wang, X. Liu, and J. Li, Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development, Cell Research, vol.23, issue.1, pp.8-15, 2004.
DOI : 10.1002/bies.1148

N. Imin, M. Nizamidin, T. Wu, and B. Rolfe, Factors involved in root formation in Medicago truncatula, Journal of Experimental Botany, vol.58, issue.3, pp.439-451, 2007.
DOI : 10.1093/jxb/erl224

Y. Inukai, Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling, THE PLANT CELL ONLINE, vol.17, issue.5, pp.1387-1396, 2005.
DOI : 10.1105/tpc.105.030981

K. Jofuku, B. Boer, M. Van-montagu, and J. Okamuro, Control of Arabidopsis Flower and Seed Development by the Homeotic Gene APETALA2, THE PLANT CELL ONLINE, vol.6, issue.9, pp.1211-1225, 1994.
DOI : 10.1105/tpc.6.9.1211

U. Kalluri, S. Difazio, A. Brunner, and G. Tuskan, Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa, BMC Plant Biology, vol.7, issue.1, 2007.
DOI : 10.1186/1471-2229-7-59

J. Kang, Y. Mizukami, H. Wang, L. Fowke, and N. Dengler, Modification of cell proliferation patterns alters leaf vein architecture in Arabidopsis thaliana, Planta, vol.20, issue.4, pp.1207-1218, 2007.
DOI : 10.1007/s00425-007-0567-2

A. Karlberg, L. Bako, and R. Bhalerao, Short Day???Mediated Cessation of Growth Requires the Downregulation of AINTEGUMENTALIKE1 Transcription Factor in Hybrid Aspen, PLoS Genetics, vol.278, issue.11, p.1002361, 2011.
DOI : 10.1371/journal.pgen.1002361.s008

S. Kim, P. Soltis, K. Wall, and D. Soltis, Phylogeny and Domain Evolution in the APETALA2-like Gene Family, Molecular Biology and Evolution, vol.23, issue.1, pp.107-120, 2006.
DOI : 10.1046/j.1365-313X.2003.01963.x

Y. Kitomi, The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling, The Plant Journal, vol.21, issue.3, pp.472-484, 2011.
DOI : 10.1105/tpc.108.061655

Y. Kitomi and H. Kitano, Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice, Plant Signaling & Behavior, vol.6, issue.9, pp.1-3, 2011.
DOI : 10.1038/nature09126

K. Klucher, H. Chow, L. Reiser, and R. Fischer, The AINTEGUMENTA Gene of Arabidopsis Required for Ovule and Female Gametophyte Development Is Related to the Floral Homeotic Gene APETALA2, THE PLANT CELL ONLINE, vol.8, issue.2, pp.137-153, 1996.
DOI : 10.1105/tpc.8.2.137

A. Kohler, C. Delaruelle, D. Martin, N. Encelot, and F. Martin, The poplar root transcriptome: analysis of 7000 expressed sequence tags, FEBS Letters, vol.480, issue.1-3, pp.1-337, 2003.
DOI : 10.1016/S0014-5793(00)01772-5

M. Konishi and M. Sugiyama, Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana, Development, vol.130, issue.23, pp.5637-5647, 2003.
DOI : 10.1242/dev.00794

B. Krizek, Auxin regulation of Arabidopsis flower development involves members of the AINTEGUMENTA-LIKE/PLETHORA (AIL/PLT) family, Journal of Experimental Botany, vol.95, issue.5, pp.3311-3319, 2011.
DOI : 10.1093/aob/mci083

B. Krizek, Making bigger plants: key regulators of final organ size, Current Opinion in Plant Biology, vol.12, issue.1, pp.17-22, 2009.
DOI : 10.1016/j.pbi.2008.09.006

J. Labbe, Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa, Tree Genetics & Genomes, vol.279, issue.16, pp.617-627, 2010.
DOI : 10.1074/jbc.M408536200

P. Krecek, The PIN-FORMED (PIN) protein family of auxin transporters, Genome Biology, vol.10, issue.12, p.249, 2009.
DOI : 10.1186/gb-2009-10-12-249

J. Leple, Transgenic poplars: expression of chimeric genes using four different constructs, Plant Cell Reports, vol.11, issue.3, pp.137-141, 1992.
DOI : 10.1007/BF00232166

M. Li, Z. Cao, W. Shen, and J. Cui, Molecular cloning and expression of a cucumber (Cucumis sativus L.) heme oxygenase-1 gene, CsHO1, which is involved in adventitious root formation, Gene, vol.486, issue.1-2, pp.47-55, 2011.
DOI : 10.1016/j.gene.2011.07.008

S. Li, L. Xue, S. Xu, H. Feng, and L. An, Hydrogen peroxide acts as a signal molecule in the adventitious root formation of mung bean seedlings, Environmental and Experimental Botany, vol.65, issue.1, pp.63-71, 2009.
DOI : 10.1016/j.envexpbot.2008.06.004

A. Lindroth, Two S-adenosylmethionine synthetase-encoding genes differentially expressed during adventitious root development in Pinus contorta, Plant Molecular Biology, vol.46, issue.3, pp.335-346, 2001.
DOI : 10.1023/A:1010637012528

H. Liu, ARL1, a LOB-domain protein required for adventitious root formation in rice, The Plant Journal, vol.15, issue.1, pp.47-56, 2005.
DOI : 10.1626/jcs.32.163

J. Ludwig-muller, A. Vertocnik, and C. Town, Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments, Journal of Experimental Botany, vol.56, issue.418, pp.2095-2105, 2005.
DOI : 10.1104/pp.91.3.1080

M. Luijten, R. Et, and . Heidstra, « Arabidopsis root development ». Annual Plant reviews, pp.127-147, 2010.

C. Ma, S. Strauss, and R. Meilan, Agrobacterium-mediated transformation of the genome-sequenced poplar clone, nisqually-1 (Populus trichocarpa), Plant Molecular Biology Reporter, vol.22, issue.3, pp.311-312, 2004.
DOI : 10.1007/BF02773145

E. Magnani, K. Sjolander, and S. Hake, From Endonucleases to Transcription Factors: Evolution of the AP2 DNA Binding Domain in Plants, THE PLANT CELL ONLINE, vol.16, issue.9, pp.2265-2277, 2004.
DOI : 10.1105/tpc.104.023135

F. Martin, The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis, Nature, vol.14, issue.7183, pp.88-87, 2008.
DOI : 10.1038/nature06556

URL : https://hal.archives-ouvertes.fr/halsde-00261893

R. Merret, Monitoring the regulation of gene expression in a growing organ using a fluid mechanics formalism, BMC Biology, vol.8, issue.1, p.18, 2010.
DOI : 10.1186/1741-7007-8-18

URL : https://hal.archives-ouvertes.fr/hal-00964820

Y. Mizukami and R. Fischer, Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis, Proceedings of the National Academy of Sciences, vol.285, issue.5426, pp.942-947, 2000.
DOI : 10.1126/science.285.5426.380

J. Mravek, Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter, Nature, vol.19, issue.7250, pp.1136-1176, 2009.
DOI : 10.1111/j.1365-2818.1993.tb03313.x

T. Nakano, K. Suzuki, T. Fujimura, and H. Shinshi, Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice, PLANT PHYSIOLOGY, vol.140, issue.2, pp.411-432, 2006.
DOI : 10.1104/pp.105.073783

S. Negi, P. Sukumar, X. Liu, J. Cohen, and G. Muday, Genetic dissection of the role of ethylene in regulating auxin-dependent lateral and adventitious root formation in tomato, The Plant Journal, vol.32, issue.1, pp.3-15
DOI : 10.1104/pp.112.4.1687

S. Nole-wilson, S. Azhakanandam, and R. Franks, Polar auxin transport together with AINTEGUMENTA and REVOLUTA coordinate early Arabidopsis gynoecium development, Developmental Biology, vol.346, issue.2, pp.181-195, 2010.
DOI : 10.1016/j.ydbio.2010.07.016

URL : https://doi.org/10.1016/j.ydbio.2010.07.016

S. Nole-wilson, T. Tranby, and B. Krizek, AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states, Plant Molecular Biology, vol.6, issue.5, pp.613-628, 2005.
DOI : 10.1007/s11103-005-0955-6

J. Okamuro, B. Caster, R. Villarroel, M. Van-montagu, and K. Jofuku, The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis, Proceedings of the National Academy of Sciences, vol.68, issue.4, pp.7076-7081, 1997.
DOI : 10.1016/0092-8674(92)90145-3

S. Ozawa, I. Yasutani, H. Fukuda, A. Komamine, and M. Sugiyama, Organogenic responses in tissue culture of srd mutants of Arabidopsis thaliana, Development, vol.125, issue.1, pp.135-142, 1998.

G. Pagnussat, M. Lanteri, and L. Lamattina, Nitric Oxide and Cyclic GMP Are Messengers in the Indole Acetic Acid-Induced Adventitious Rooting Process, PLANT PHYSIOLOGY, vol.132, issue.3, pp.1241-1248, 2003.
DOI : 10.1104/pp.103.022228

J. Petrasek and J. Friml, Auxin transport routes in plant development, Development, vol.136, issue.16, pp.2675-2688, 2009.
DOI : 10.1242/dev.030353

T. Pop, D. Pamfil, and C. Bellini, Auxin Control in the Formation of Adventitious Roots, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, vol.39, issue.1, pp.307-316, 2011.
DOI : 10.15835/nbha3916101

URL : https://hal.archives-ouvertes.fr/hal-01000975

E. Rademacher, A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family. The Plant journal : for cell and molecular biology, pp.597-606, 2011.

J. Rameau, D. Mansion, and G. Dumé, Flore forestière Française, guide écologique illustré (idf), 2005.

G. Ramirez-carvajal, A. Morse, C. Dervinis, and J. Davis, The Cytokinin Type-B Response Regulator PtRR13 Is a Negative Regulator of Adventitious Root Development in Populus, PLANT PHYSIOLOGY, vol.150, issue.2, pp.759-771, 2009.
DOI : 10.1104/pp.109.137505

G. Ramirez-carvajal and J. Davis, Cutting to the base, Plant Signaling & Behavior, vol.35, issue.3, pp.281-284, 2010.
DOI : 10.1073/pnas.0811075106

J. Riechmann and E. Meyerowitz, The AP2/EREBP family of plant transcription factors, Biological Chemistry, vol.379, issue.6, pp.633-646, 1998.

C. Roy, Formation Biomasse 2007 à l'attention des agents des DRAF et DDAF, Module 1 : Enjeux et contexte du développement des valorisations non alimentaire de la biomasse, item 4 : Prévisions et prospective, 2007.

S. Roy and B. Choudhury, Studies on physico-chemical characteristics of a few varieties of tomato (Lycopersicon esculentum Mill.) in relation to processing, Journal of Food Science and Technology, vol.9, issue.3, pp.151-153, 1972.

E. Rubin, Genomics of cellulosic biofuels, Nature, vol.23, issue.7206, pp.841-845, 2008.
DOI : 10.1038/nature07190

C. M. Ruedell and J. Schwambach, Adventitious root formation of forest trees and horticultural plants-from genes to applications, pp.337-358, 2009.

S. Sabatini, R. Heidstra, M. Wildwater, and B. Scheres, SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem, Genes & Development, vol.17, issue.3, pp.354-358, 2003.
DOI : 10.1101/gad.252503

Y. Sakuma, DNA-Binding Specificity of the ERF/AP2 Domain of Arabidopsis DREBs, Transcription Factors Involved in Dehydration- and Cold-Inducible Gene Expression, Biochemical and Biophysical Research Communications, vol.290, issue.3, pp.998-1009, 2002.
DOI : 10.1006/bbrc.2001.6299

C. Sanchez, Two SCARECROW-LIKE genes are induced in response to exogenous auxin in rooting-competent cuttings of distantly related forest species, Tree Physiology, vol.27, issue.10, pp.1459-1470, 2007.
DOI : 10.1093/treephys/27.10.1459

L. Sbabou, Molecular analysis of SCARECROW genes expressed in white lupin cluster roots, Journal of Experimental Botany, vol.127, issue.5, pp.1351-1363, 2010.
DOI : 10.1104/pp.121.2.317

J. Schrader, A High-Resolution Transcript Profile across the Wood-Forming Meristem of Poplar Identifies Potential Regulators of Cambial Stem Cell Identity, THE PLANT CELL ONLINE, vol.16, issue.9, pp.2278-2292, 2004.
DOI : 10.1105/tpc.104.024190

M. Schruff, The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs, Development, vol.133, issue.2, pp.251-261, 2006.
DOI : 10.1242/dev.02194

J. Schwambach, C. Fadanelli, and A. Fett-neto, Mineral nutrition and adventitious rooting in microcuttings of Eucalyptus globulus, Tree Physiology, vol.25, issue.4, pp.487-494, 2005.
DOI : 10.1093/treephys/25.4.487

M. Sedira, E. Butler, T. Gallagher, and M. Welander, Verification of auxin-induced gene expression during adventitious rooting in rolB-transformed and untransformed apple Jork 9, Plant Science, vol.168, issue.5, pp.1193-1198, 2005.
DOI : 10.1016/j.plantsci.2004.12.017

F. Sitbon, Transgenic Tobacco Plants Coexpressing the Agrobacterium tumefaciens iaaM and iaaH Genes Display Altered Growth and Indoleacetic Acid Metabolism, PLANT PHYSIOLOGY, vol.99, issue.3, pp.1062-1069, 1992.
DOI : 10.1104/pp.99.3.1062

D. Smith and N. Fedoroff, LRP1, a Gene Expressed in Lateral and Adventitious Root Primordia of Arabidopsis, THE PLANT CELL ONLINE, vol.7, issue.6, pp.735-745, 1995.
DOI : 10.1105/tpc.7.6.735

S. Smith and . Read, Mycorrhizal symbiosis, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01268065

D. Smith and T. Thorpe, Seedlings, Journal of Experimental Botany, vol.26, issue.2, p.184, 1975.
DOI : 10.1093/jxb/26.2.184

K. Sohn, S. Lee, H. Jung, J. Hong, and B. Hwang, Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance, Plant Molecular Biology, vol.22, issue.6, pp.897-915, 2006.
DOI : 10.5423/PPJ.2005.21.2.099

J. Song, S. Lu, Z. Chen, R. Lourenco, and V. Chiang, Genetic Transformation of Populus trichocarpa Genotype Nisqually-1: A Functional Genomic Tool for Woody Plants, Plant and Cell Physiology, vol.26, issue.11, pp.1582-1589, 2006.
DOI : 10.1093/treephys/26.4.401

C. Sorin, Auxin and Light Control of Adventitious Rooting in Arabidopsis Require ARGONAUTE1, THE PLANT CELL ONLINE, vol.17, issue.5, pp.1343-1359, 2005.
DOI : 10.1105/tpc.105.031625

C. Sorin, Proteomic Analysis of Different Mutant Genotypes of Arabidopsis Led to the Identification of 11 Proteins Correlating with Adventitious Root Development, PLANT PHYSIOLOGY, vol.140, issue.1, pp.349-364, 2006.
DOI : 10.1104/pp.105.067868

B. Steffens, J. Wang, and M. Sauter, Interactions between ethylene, gibberellin and abscisic acid regulate emergence and growth rate of adventitious roots in deepwater rice, Planta, vol.5, issue.4, pp.604-612, 2006.
DOI : 10.1104/pp.103.3.783

T. Steinmann, Coordinated Polar Localization of Auxin Efflux Carrier PIN1 by GNOM ARF GEF, Science, vol.286, issue.5438, pp.316-318, 1999.
DOI : 10.1126/science.286.5438.316

I. Terpstra and R. Heidstra, Stem cells: The root of all cells, Seminars in Cell & Developmental Biology, vol.20, issue.9, pp.1089-96, 2009.
DOI : 10.1016/j.semcdb.2009.09.012

P. Thomas, M. Lee, and J. Schiefelbein, Molecular identification of proline-rich protein genes induced during root formation in grape (Vitis vinifera L.) stem cuttings, Plant, Cell and Environment, vol.53, issue.9, pp.1497-1504, 2003.
DOI : 10.1034/j.1399-3054.1994.920110.x

M. Thomashow, PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms, Annual Review of Plant Physiology and Plant Molecular Biology, vol.50, issue.1, pp.571-599, 1999.
DOI : 10.1146/annurev.arplant.50.1.571

J. Torrey, . Root, . Hormones, and . Plant-growth, Root Hormones and Plant Growth, Annual Review of Plant Physiology, vol.27, issue.1, pp.435-459, 1976.
DOI : 10.1146/annurev.pp.27.060176.002251

G. Tuskan, The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray), Science, vol.313, issue.5793, pp.1596-1604, 2006.
DOI : 10.1126/science.1128691

W. Vanderkrieken, H. Breteler, M. Visser, . Uptake, . Metabolism et al., microcuttings, Acta Botanica Neerlandica, vol.106, issue.4, pp.435-442, 1992.
DOI : 10.1104/pp.91.3.1080

S. Vanneste and J. Friml, Auxin: A Trigger for Change in Plant Development, Cell, vol.136, issue.6, pp.1005-1016, 2009.
DOI : 10.1016/j.cell.2009.03.001

H. Wang, OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice, Plant Molecular Biology Reporter, vol.18, issue.2, pp.411-417, 2011.
DOI : 10.1105/tpc.106.046490

T. Werner, Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity, THE PLANT CELL ONLINE, vol.15, issue.11, pp.2532-2550, 2003.
DOI : 10.1105/tpc.014928

T. Werner, V. Motyka, M. Strnad, and T. Schmulling, Regulation of plant growth by cytokinin, Proceedings of the National Academy of Sciences, vol.270, issue.5244, pp.10487-10492, 2001.
DOI : 10.1126/science.270.5244.1986

S. Wessler, Homing into the origin of the AP2 DNA binding domain, Trends in Plant Science, vol.10, issue.2, pp.54-56, 2005.
DOI : 10.1016/j.tplants.2004.12.007

A. Woodward and B. Bartel, Auxin: Regulation, Action, and Interaction, Annals of Botany, vol.95, issue.5, pp.707-735, 2005.
DOI : 10.1093/aob/mci083

B. Wu, Over-expression of mango (Mangifera indica L.) MiARF2 inhibits root and hypocotyl growth of Arabidopsis, Molecular Biology Reports, vol.48, issue.5, pp.3189-3194, 2011.
DOI : 10.1111/j.1744-7909.2006.00280.x

J. Wuitschick, P. Lindstrom, A. Meyer, and K. Karrer, Homing Endonucleases Encoded by Germ Line-Limited Genes in Tetrahymena thermophila Have APETELA2 DNA Binding Domains, Eukaryotic Cell, vol.3, issue.3, pp.685-694, 2004.
DOI : 10.1128/EC.3.3.685-694.2004

M. Xu, L. Zhu, H. Shou, and P. Wu, A PIN1 Family Gene, OsPIN1, involved in Auxin-dependent Adventitious Root Emergence and Tillering in Rice, Plant and Cell Physiology, vol.46, issue.10, pp.1674-1681, 2005.
DOI : 10.1016/j.pbi.2004.11.001

W. Xuan, The Heme Oxygenase/Carbon Monoxide System Is Involved in the Auxin-Induced Cucumber Adventitious Rooting Process, PLANT PHYSIOLOGY, vol.148, issue.2, pp.881-893, 2008.
DOI : 10.1104/pp.108.125567

K. Yamaguchi-shinozaki, K. Shinozaki, . Is, . In, . To et al., A Novel cis-Acting Element in an Arabidopsis Gene Is Involved in Responsiveness to Drought, Low-Temperature, or High-Salt Stress, THE PLANT CELL ONLINE, vol.6, issue.2, pp.251-264, 1994.
DOI : 10.1105/tpc.6.2.251

E. Yoon, J. Yang, and W. Lee, Auxin and Abscisic Acid Responses of Auxin Response Factor 3 in Arabidopsis Lateral Root Development, Journal of Plant Biology, vol.19, issue.2, pp.150-154
DOI : 10.1007/s12374-010-9100-4

R. Zalesny and J. Zalesny, Adventitious root formation of forest trees and horticultural plants-from genes to applications, pp.359-384, 2009.

Y. Zhao, A Role for Flavin Monooxygenase-Like Enzymes in Auxin Biosynthesis, Science, vol.291, issue.5502, pp.306-309, 2001.
DOI : 10.1126/science.291.5502.306

G. Zhou, G. Taylor, and A. Polle, FTIR-ATR-based prediction and modelling of lignin and energy contents reveals independent intra-specific variation of these traits in bioenergy poplars, Plant Methods, vol.7, issue.1, 2011.
DOI : 10.1515/HF.2008.104

J. Zhuang, Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa, Biochemical and Biophysical Research Communications, vol.371, issue.3, pp.468-474, 2008.
DOI : 10.1016/j.bbrc.2008.04.087

P. Zimmerman and A. Hitchcock, Plant Hormones, Annual Review of Biochemistry, vol.17, issue.1, pp.601-626, 1948.
DOI : 10.1146/annurev.bi.17.070148.003125