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, Annexes INDEX_MATRIX=1:Grey_levels
, 1)) % to see the histogram threshold=50000; % any number bigger than Gry_levels for tc=1: Grey_levels %tc % Foreground calculations FG=double, % transform it % plot(INDEX_MATRIX,XH
:tc,1); % foreground index FG_RESULT=FG.*IM_FG; % multiply index and histogram Sum_FG=sum(FG_RESULT) ,
, FG
, Grey_levels,1), issue.tc+1
,
, ArealPorosity= 1-sum(sum(Y))/(d(1)*d(2)) % porosity = total_void pixels/total_pixels subplot
, % show original image % AverageRunlenghts for horz=1
, Y((d(1)+1),horz)=0
, % horz for, vol.1
, Y_perimeter=bwperim(Y)
, % it is a new image
, Perimeter=sum(sum(Y_perimeter)) % calculate perimeter xlswrite('report.xls',N1
, report.xls',ArealPorosity,'ArealPorosity','D1')
, report.xls',N1,'Homogeneity','A1')
, report.xls',H,'Homogeneity','D1')
, report.xls',N1
, report.xls',N1,'TexturalEntropy','A1')
, report.xls',TE,'TexturalEntropy','D1')
, report.xls',N1,'Runlenghts','A1')
, report.xls',AVRL,'Runlenghts','D1')
, report.xls',AHRL,'Runlenghts','E1')
, report.xls',N1,'Diffusiondistances','A1')
, report.xls',ADD,'Diffusiondistances','D1')
, report.xls',MDD,'Diffusiondistances','E1')
, report.xls',N1
, report.xls',Perimeter
, Annexe 4 : Corrélation entre la quantité de N. fowleri mesurée dans l'eau et dans le biofilm