M. Achtman, Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens, Annual Review of Microbiology, vol.62, issue.1, pp.53-70, 2008.
DOI : 10.1146/annurev.micro.62.081307.162832

M. I. Afzal, S. Delaunay, C. Paris, F. Borges, A. M. Revol-junelles et al., Identification of metabolic pathways involved in the biosynthesis of flavor compound 3-methylbutanal from leucine catabolism by Carnobacterium maltaromaticum LMA 28, International Journal of Food Microbiology, vol.157, issue.3, pp.332-339, 2012.
DOI : 10.1016/j.ijfoodmicro.2012.05.010

URL : https://hal.archives-ouvertes.fr/hal-00777662

M. I. Afzal, C. C. Gonzalez-ariceaga, E. Lhomme, N. Kamel-ali, S. Payot et al., Characterization of Carnobacterium maltaromaticum LMA 28 for its positive technological role in soft cheese making, Food Microbiology, vol.36, issue.2, pp.223-230, 2013.
DOI : 10.1016/j.fm.2013.05.008

URL : https://hal.archives-ouvertes.fr/hal-01272773

M. I. Afzal, T. Jacquet, S. Delaunay, F. Borges, J. B. Milliere et al., Carnobacterium maltaromaticum: Identification, isolation tools, ecology and technological aspects in dairy products, Food Microbiology, vol.27, issue.5, pp.573-579, 2010.
DOI : 10.1016/j.fm.2010.03.019

URL : https://hal.archives-ouvertes.fr/hal-00798894

J. P. Audia, C. C. Webb, and J. W. Foster, Breaking through the acid barrier: An orchestrated response to proton stress by enteric bacteria, International Journal of Medical Microbiology, vol.291, issue.2, pp.97-106, 2001.
DOI : 10.1078/1438-4221-00106

R. M. Baird, J. E. Corry, G. W. Curtis, D. A. Mossel, and N. Skovgaard, Pharmacopoeia of culture media for food microbiology: additional monographs, Int J Food Microbiol, vol.9, pp.85-144, 1989.

R. K. Barakat, M. W. Griffiths, and L. J. Harris, Isolation and characterization of Carnobacterium, Lactococcus, and Enterococcus spp. from cooked, modified atmosphere packaged, refrigerated, poultry meat, International Journal of Food Microbiology, vol.62, issue.1-2, pp.83-94, 2000.
DOI : 10.1016/S0168-1605(00)00381-0

M. Begley, C. G. Gahan, and C. Hill, The interaction between bacteria and bile, FEMS Microbiology Reviews, vol.29, issue.4, pp.625-651, 2005.
DOI : 10.1073/pnas.94.13.6712

E. Bernard, T. Rolain, P. Courtin, A. Guillot, P. Langella et al., -Acetylglucosamine, Journal of Biological Chemistry, vol.135, issue.27, pp.286-23950, 2011.
DOI : 10.1073/pnas.0337704100

E. Bilhere, P. M. Lucas, O. Claisse, and A. Lonvaud-funel, Multilocus Sequence Typing of Oenococcus oeni: Detection of Two Subpopulations Shaped by Intergenic Recombination, Applied and Environmental Microbiology, vol.75, issue.5, pp.1291-1300, 2009.
DOI : 10.1128/AEM.02563-08

J. Bjorkroth, J. Ridell, and H. Korkeala, Characterization of Lactobacillus sake strains associating with production of ropy slime by randomly amplified polymorphic DNA (RAPD) and pulsed-field gel electrophoresis (PFGE) patterns, International Journal of Food Microbiology, vol.31, issue.1-3, pp.1-3, 1996.
DOI : 10.1016/0168-1605(96)00964-6

K. J. Bjorkroth and H. J. Korkeala, Use of rRNA gene restriction patterns to evaluate lactic acid bacterium contamination of vacuum-packaged sliced cooked whole-meat product in a meat processing plant, Appl Environ Microbiol, vol.63, issue.2, pp.448-453, 1997.

A. Bolotin, B. Quinquis, P. Renault, A. Sorokin, S. D. Ehrlich et al., Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus, Nature Biotechnology, vol.16, issue.12, pp.22-1554, 2004.
DOI : 10.1073/pnas.95.11.5849

I. G. Boneca, O. Dussurget, D. Cabanes, M. A. Nahori, S. Sousa et al., evasion from the host innate immune system, Proceedings of the National Academy of Sciences, vol.104, issue.3, pp.997-1002, 2007.
DOI : 10.1084/jem.174.2.459

URL : https://hal.archives-ouvertes.fr/pasteur-00139188

A. T. Borchers, C. Selmi, F. J. Meyers, C. L. Keen, and M. E. Gershwin, Probiotics and immunity, Journal of Gastroenterology, vol.115, issue.Suppl3, pp.26-46, 2009.
DOI : 10.4049/jimmunol.168.1.171

Y. Bouhnik, P. Pochart, P. Marteau, G. Arlet, I. Goderel et al., Fecal recovery in humans of viable Bifidobacterium sp ingested in fermented milk, Gastroenterology, vol.102, issue.3, pp.102-875, 1992.
DOI : 10.1016/0016-5085(92)90172-U

F. Bourdichon, S. Casaregola, C. Farrokh, J. C. Frisvad, M. L. Gerds et al., Food fermentations: Microorganisms with technological beneficial use, International Journal of Food Microbiology, vol.154, issue.3, pp.87-97, 2012.
DOI : 10.1016/j.ijfoodmicro.2011.12.030

URL : https://hal.archives-ouvertes.fr/hal-01004544

B. J. Bratina, B. S. Stevenson, W. J. Green, and T. M. Schmidt, Manganese reduction by microbes from oxic regions of the lake vanda (Antarctica) water column, Appl Environ Microbiol, vol.64, issue.10, pp.3791-3797, 1998.

J. Bridier, O. Claisse, M. Coton, E. Coton, and A. Lonvaud-funel, Evidence of Distinct Populations and Specific Subpopulations within the Species Oenococcus oeni, Applied and Environmental Microbiology, vol.76, issue.23, pp.76-7754, 2010.
DOI : 10.1128/AEM.01544-10

R. Van-kranenburg, J. D. Marugg, S. Van, . Ii, N. J. Willem et al., Molecular characterization of the plasmid-encoded eps gene cluster essential for exopolysaccharide biosynthesis in Lactococcus lactis, Molecular Microbiology, vol.24, issue.2, pp.387-397, 1997.
DOI : 10.1046/j.1365-2958.1997.3521720.x

P. Veiga, M. Erkelenz, E. Bernard, P. Courtin, S. Kulakauskas et al., Identification of the Asparagine Synthase Responsible for D-Asp Amidation in the Lactococcus lactis Peptidoglycan Interpeptide Crossbridge, Journal of Bacteriology, vol.191, issue.11, pp.191-3752, 2009.
DOI : 10.1128/JB.00126-09

M. P. Velez, S. C. De-keersmaecker, and J. Vanderleyden, in the human gastrointestinal tract, FEMS Microbiology Letters, vol.276, issue.2, pp.140-148, 2007.
DOI : 10.1111/j.1574-6968.2007.00908.x

M. Ventura and R. Zink, by using PCR-based methods and pulsed-field gel electrophoresis, FEMS Microbiology Letters, vol.33, issue.2, pp.141-154, 2002.
DOI : 10.1016/S0723-2020(99)80011-3

E. Vihavainen, H. S. Lundstrom, T. Susiluoto, J. Koort, L. Paulin et al., Role of Broiler Carcasses and Processing Plant Air in Contamination of Modified-Atmosphere-Packaged Broiler Products with Psychrotrophic Lactic Acid Bacteria, Applied and Environmental Microbiology, vol.73, issue.4, pp.1136-1145, 2007.
DOI : 10.1128/AEM.01644-06

S. Vimont, B. Mnif, C. Fevre, and S. Brisse, Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates, Journal of Medical Microbiology, vol.11, issue.4, pp.1308-1310, 2008.
DOI : 10.1128/CMR.18.4.657-686.2005

S. Voget, B. Klippel, R. Daniel, and G. Antranikian, Complete Genome Sequence of Carnobacterium sp. 17-4, Journal of Bacteriology, vol.193, issue.13, pp.3403-3404, 2011.
DOI : 10.1128/JB.05113-11

W. Vollmer, Structural variation in the glycan strands of bacterial peptidoglycan, FEMS Microbiology Reviews, vol.32, issue.2, pp.287-306, 2008.
DOI : 10.1139/m84-083

W. Vollmer, Structural variation in the glycan strands of bacterial peptidoglycan, FEMS Microbiology Reviews, vol.32, issue.2, pp.287-306, 2008.
DOI : 10.1139/m84-083

P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. Van-de-lee et al., AFLP: a new technique for DNA fingerprinting, Nucleic Acids Research, vol.23, issue.21, pp.23-4407, 1995.
DOI : 10.1093/nar/23.21.4407

V. K. Walker, G. R. Palmer, and G. Voordouw, Freeze-Thaw Tolerance and Clues to the Winter Survival of a Soil Community, Applied and Environmental Microbiology, vol.72, issue.3, pp.1784-1792, 2006.
DOI : 10.1128/AEM.72.3.1784-1792.2006

T. Wall, K. Bath, R. A. Britton, H. Jonsson, J. Versalovic et al., The Early Response to Acid Shock in Lactobacillus reuteri Involves the ClpL Chaperone and a Putative Cell Wall-Altering Esterase, Applied and Environmental Microbiology, vol.73, issue.12, pp.73-3924, 2007.
DOI : 10.1128/AEM.01502-06

I. Zilber-rosenberg and E. Rosenberg, Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution, FEMS Microbiology Reviews, vol.32, issue.5, pp.723-735, 2008.
DOI : 10.1080/089106001750462669

G. Zoumpopoulou, B. Foligne, K. Christodoulou, C. Grangette, B. Pot et al., Lactobacillus fermentum ACA-DC 179 displays probiotic potential in vitro and protects against trinitrobenzene sulfonic acid (TNBS)-induced colitis and Salmonella infection in murine models, International Journal of Food Microbiology, vol.121, issue.1, pp.18-26, 2008.
DOI : 10.1016/j.ijfoodmicro.2007.10.013

. Inra, . Micalis, F. Jouy-en-josas, U. Agroparistech, and . Micalis, Vandoeuvre-lès Jouy-en-Josas, France c, e ; L'Université Nantes Angers Le Mans Oniris, UMR 1014 Secalim f ; National Food Institute (DTU Food)

M. Afzal, T. Jacquet, S. Delaunay, F. Borges, J. Millière et al., Carnobacterium maltaromaticum: Identification, isolation tools, ecology and technological aspects in dairy products, Food Microbiology, vol.27, issue.5, pp.573-579, 2010.
DOI : 10.1016/j.fm.2010.03.019

URL : https://hal.archives-ouvertes.fr/hal-00798894

J. Leisner, B. Laursen, H. Prévost, D. Drider, and P. Dalgaard, positive and negative effects in the environment and in foods, FEMS Microbiology Reviews, vol.31, issue.5, pp.592-613, 2007.
DOI : 10.3354/dao019015

J. Millière, M. Michel, F. Mathieu, and G. Lefebvre, spp. in French surface mould-ripened soft-cheese, Journal of Applied Bacteriology, vol.22, issue.3, pp.264-269, 1994.
DOI : 10.1007/BF02545855

C. Hemmerich, A. Buechlein, R. Podicheti, K. Revanna, and Q. Dong, An Ergatis-based prokaryotic genome annotation web server, Bioinformatics, vol.19, issue.8, pp.1122-1124, 2010.
DOI : 10.1093/bioinformatics/btg086

S. Voget, B. Klippel, R. Daniel, and G. Antranikian, Complete Genome Sequence of Carnobacterium sp. 17-4, Journal of Bacteriology, vol.193, issue.13, pp.3403-3404, 2011.
DOI : 10.1128/JB.05113-11

J. Leisner, M. Hansen, M. Larsen, L. Hansen, H. Ingmer et al., The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors, International Journal of Food Microbiology, vol.152, issue.3, pp.107-115, 2012.
DOI : 10.1016/j.ijfoodmicro.2011.05.012

F. Lauro, R. Chastain, L. Blankenship, A. Yayanos, and D. Bartlett, The Unique 16S rRNA Genes of Piezophiles Reflect both Phylogeny and Adaptation, Applied and Environmental Microbiology, vol.73, issue.3, pp.838-845, 2007.
DOI : 10.1128/AEM.01726-06

M. Liu, A. Nauta, C. Francke, and R. Siezen, Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria, Applied and Environmental Microbiology, vol.74, issue.15, pp.4590-4600, 2008.
DOI : 10.1128/AEM.00150-08

M. Abdur-rahman-a, M. Gleinser-b, M. I. Afzal, T. Jacquet, S. Delaunay et al., Muhammad Inam Afzal a , Alexandre Back a , Cécile Mangavel a , Catherine Cailliez-Grimal a , Anne-Marie Revol-Junelles a , Frédéric Borges a Carnobacterium maltaromaticum: identification, isolation tools, ecology and technological aspects in dairy products, Food Microbiology, vol.27, pp.573-579, 2010.

F. Bourdichon, S. Casaregola, C. Farrokh, J. C. Frisvad, M. L. Gerds et al., Food fermentations: Microorganisms with technological beneficial use, International Journal of Food Microbiology, vol.154, issue.3, pp.87-97, 2012.
DOI : 10.1016/j.ijfoodmicro.2011.12.030

URL : https://hal.archives-ouvertes.fr/hal-01004544

M. Briggiler-marco, M. L. Capra, A. Quiberoni, G. Vinderola, J. A. Reinheimer et al., Nonstarter Lactobacillus Strains as Adjunct Cultures for Cheese Making: In Vitro Characterization and Performance in Two Model Cheeses, Journal of Dairy Science, vol.90, issue.10, pp.4532-4542, 2007.
DOI : 10.3168/jds.2007-0180

J. M. Brulc, D. A. Antonopoulos, M. E. Miller, M. K. Wilson, A. C. Yannarell et al., Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases, Proceedings of the National Academy of Sciences of the United States of America, 2009.
DOI : 10.1007/BF02289565

C. Cailliez-grimal, H. C. Edima, A. M. Revol-junelles, and J. B. Millière, Short Communication: Carnobacterium maltaromaticum: The Only Carnobacterium Species in French Ripened Soft Cheeses as Revealed by Polymerase Chain Reaction Detection, Journal of Dairy Science, vol.90, issue.3, 2007.
DOI : 10.3168/jds.S0022-0302(07)71599-0

D. Chmelar, A. Matusek, J. Korger, E. Durnova, M. Steffen et al., Isolation of Carnobacterium piscicola from human pus e case report, Folia Microbiologica, pp.47-455, 2002.

L. V. Collins, S. A. Kristian, C. Weidenmaier, M. Faigle, K. P. Van-kessel et al., ???Alanine Modifications of Teichoic Acids Are Highly Susceptible to Human Neutrophil Killing and Are Virulence Attenuated in Mice, The Journal of Infectious Diseases, vol.186, issue.2, pp.214-219, 2002.
DOI : 10.1086/341454

P. L. Conway, S. L. Gorbach, and B. R. Goldin, Survival of Lactic Acid Bacteria in the Human Stomach and Adhesion to Intestinal Cells, Journal of Dairy Science, vol.70, issue.1, pp.1-12, 1987.
DOI : 10.3168/jds.S0022-0302(87)79974-3

Y. Dieye, V. Oxaran, F. Ledue-clier, W. Alkhalaf, G. Buist et al., Functionality of Sortase A in Lactococcus lactis, Applied and Environmental Microbiology, vol.76, issue.21, pp.7332-7337, 2010.
DOI : 10.1128/AEM.00928-10

URL : https://hal.archives-ouvertes.fr/hal-01204271

H. C. Edima, C. Cailliez-grimal, A. M. Revol-junelles, E. Rondags, and J. B. Milliere, Short Communication: Impact of pH and Temperature on the Acidifying Activity of Carnobacterium maltaromaticum, Journal of Dairy Science, vol.91, issue.10, pp.3806-3813, 2008.
DOI : 10.3168/jds.2007-0878

H. C. Edima, C. Cailliez-grimal, A. M. Revol-junelles, L. Tonti, and M. Linder, A selective enumeration medium for Carnobacterium maltaromaticum, Journal of Microbiological Methods, vol.68, issue.3, pp.516-521, 2007.
DOI : 10.1016/j.mimet.2006.10.006

B. Foligne, R. Dessein, M. Marceau, S. Poiret, M. Chamaillard et al., Prevention and Treatment of Colitis With Lactococcus lactis Secreting the Immunomodulatory Yersinia LcrV Protein, Gastroenterology, vol.133, issue.3, pp.862-874, 2007.
DOI : 10.1053/j.gastro.2007.06.018

B. Foligne, S. Nutten, C. Grangette, V. Dennin, D. Goudercourt et al., Correlation between in vitro and in vivo immunomodulatory properties of lactic acid bacteria, World Journal of Gastroenterology, vol.13, issue.2, pp.236-243, 2007.
DOI : 10.3748/wjg.v13.i2.236

M. Gleinser, V. Grimm, D. Zhurina, J. Yuan, and C. U. Riedel, Improved adhesive properties of recombinant bifidobacteria expressing the Bifidobacterium bifidum-specific lipoprotein BopA, Microbial Cell Factories, vol.11, issue.1, p.80, 2012.
DOI : 10.1093/nar/gkn359

E. A. Grice, H. H. Kong, S. Conlan, C. B. Deming, J. Davis et al., Topographical and Temporal Diversity of the Human Skin Microbiome, Science, vol.3, issue.7, pp.1190-1192, 2009.
DOI : 10.1371/journal.pone.0002719

K. Kailasapathy and J. Chin, spp., Immunology and Cell Biology, vol.22, issue.(Suppl.), pp.80-88, 2000.
DOI : 10.1016/S0315-5463(89)70426-0

D. H. Kim and B. Austin, Cytokine expression in leucocytes and gut cells of rainbow trout, Oncorhynchus mykiss Walbaum, induced by probiotics, Veterinary Immunology and Immunopathology, vol.114, issue.3-4, pp.297-304, 2006.
DOI : 10.1016/j.vetimm.2006.08.015

D. H. Kim and B. Austin, Innate immune responses in rainbow trout (Oncorhynchus mykiss, Walbaum) induced by probiotics. Fish and Shellfish Immunology, pp.513-524, 2006.

M. Kleerebezem, P. Hols, E. Bernard, T. Rolain, M. Zhou et al., The extracellular biology of the lactobacilli, FEMS Microbiology Reviews, vol.61, issue.2, 2010.
DOI : 10.1038/nprot.2006.143

N. Klijn, A. H. Weerkamp, W. M. De-vos, R. Kranenburg, J. D. Marugg et al., Genetic marking of Lactococcus lactis shows its survival in the human gastrointestinal tract Molecular characterization of the plasmid-encoded eps gene cluster essential for exopolysaccharide biosynthesis in Lactococcus lactis, Applied and Environmental Microbiology Molecular Microbiology, vol.61, issue.24, pp.387-397, 1995.

J. M. Lambert, R. S. Bongers, W. M. De-vos, and M. Kleerebezem, Functional Analysis of Four Bile Salt Hydrolase and Penicillin Acylase Family Members in Lactobacillus plantarum WCFS1, Applied and Environmental Microbiology, vol.74, issue.15, pp.4719-4726, 2008.
DOI : 10.1128/AEM.00137-08

B. G. Laursen, J. J. Leisner, and P. Dalgaard, on Sensory Characteristics of Modified Atmosphere Packed Shrimp, Journal of Agricultural and Food Chemistry, vol.54, issue.10, pp.3604-3611, 2006.
DOI : 10.1021/jf053017f

S. Lebeer, J. Vanderleyden, and S. C. De-keersmaecker, Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens, Nature Reviews Microbiology, vol.104, issue.3, pp.171-184, 2010.
DOI : 10.1016/S0168-6445(98)00042-4

J. J. Leisner, M. A. Hansen, M. H. Larsen, L. Hansen, H. Ingmer et al., The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors, International Journal of Food Microbiology, vol.152, issue.3, pp.107-115, 2012.
DOI : 10.1016/j.ijfoodmicro.2011.05.012

J. J. Leisner, B. G. Laursen, H. Prevost, D. Drider, and P. Dalgaard, Carnobacterium: positive and negative effects in the environment and in foods, FEMS Microbiology Reviews, pp.31-592, 2007.

F. Leroi, N. Arbey, J. J. Joffraud, and F. Chevalier, Effect of inoculation with lactic acid bacteria on extending the shelf-life of vacuum-packed cold smoked salmon, International Journal of Food Science and Technology, vol.31, issue.6, pp.31-497, 1996.
DOI : 10.1046/j.1365-2621.1996.00366.x

R. E. Ley, M. Hamady, C. Lozupone, P. J. Turnbaugh, R. R. Ramey et al., Evolution of Mammals and Their Gut Microbes, Science, vol.99, issue.12, pp.1647-1651, 2008.
DOI : 10.1073/pnas.102164299

F. Mathieu, M. Michel, A. Lebrihi, and G. Lefebvre, Effect of the bacteriocin carnocin CP5 and of the producing strain Carnobacterium piscicola CP5 on the viability of Listeria monocytogenes ATCC 15313 in salt solution, broth and skimmed milk, at various incubation temperatures, International Journal of Food Microbiology, vol.22, issue.2-3, pp.155-172, 1994.
DOI : 10.1016/0168-1605(94)90139-2

A. Miller, M. E. Morgan, and L. M. Libbey, Lactobacillus maltaromicus, a New Species Producing a Malty Aroma, International Journal of Systematic Bacteriology, vol.24, issue.3, pp.346-354, 1974.
DOI : 10.1099/00207713-24-3-346

D. Mora, M. Scarpellini, L. Franzetti, S. Colombo, and A. Galli, Reclassification of Lactobacillus maltaromicus (Miller et al. 1974) DSM 20342T and DSM 20344 and Carnobacterium piscicola (Collins et al. 1987) DSM 20730T and DSM 20722 as Carnobacterium maltaromaticum comb. nov., INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.53, issue.3, pp.675-678, 2003.
DOI : 10.1099/ijs.0.02405-0

C. L. Ohland and W. K. Macnaughton, Probiotic bacteria and intestinal epithelial barrier function, American Journal of Physiology-Gastrointestinal and Liver Physiology, vol.273, issue.6, pp.807-819, 2010.
DOI : 10.1111/j.1462-5822.2006.00836.x

O. Sullivan, O. O-'callaghan, J. Sangrador-vegas, A. Mcauliffe, O. Slattery et al., Comparative genomics of lactic acid bacteria reveals a niche-specific gene set, BMC Microbiology, vol.9, issue.1, p.50, 2009.
DOI : 10.1186/1471-2180-9-50

A. Peschel, R. W. Jack, M. Otto, L. V. Collins, P. Staubitz et al., Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with L-lysine, Journal of Experimental Medicine, vol.193, 2001.

A. Peschel, M. Otto, R. W. Jack, H. Kalbacher, G. Jung et al., Confers Sensitivity to Defensins, Protegrins, and Other Antimicrobial Peptides, Journal of Biological Chemistry, vol.178, issue.13, pp.8405-8410, 1999.
DOI : 10.1093/nar/14.11.4683

J. Preising, D. Philippe, M. Gleinser, H. Wei, S. Blum et al., Selection of Bifidobacteria Based on Adhesion and Anti-Inflammatory Capacity In Vitro for Amelioration of Murine Colitis, Applied and Environmental Microbiology, vol.76, issue.9, pp.3048-3051, 2010.
DOI : 10.1128/AEM.03127-09

C. Rachman, P. Kabadjova, R. Valcheva, H. Prevost, and X. Dousset, Identification of Carnobacterium Species by Restriction Fragment Length Polymorphism of the 16S-23S rRNA Gene Intergenic Spacer Region and Species-Specific PCR, Applied and Environmental Microbiology, vol.70, issue.8, pp.4468-4477, 2004.
DOI : 10.1128/AEM.70.8.4468-4477.2004

L. C. Roger, A. Costabile, D. T. Holland, L. Hoyles, and A. L. Mccartney, Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life, Microbiology, vol.478, issue.7124, pp.3329-3341, 2010.
DOI : 10.1007/0-306-46830-1_7

R. M. Sakala, H. Hayashidani, Y. Kato, T. Hirata, Y. Makino et al., Change in the composition of the microflora on vacuum-packaged beef during chiller storage, International Journal of Food Microbiology, vol.74, issue.1-2, pp.87-99, 2002.
DOI : 10.1016/S0168-1605(01)00732-2

J. L. Telford, M. A. Barocchi, I. Margarit, R. Rappuoli, and G. Grandi, Pili in Gram-positive pathogens, Nature Reviews Microbiology, vol.30, issue.7, pp.509-519, 2006.
DOI : 10.1084/jem.30.3.179

P. Veiga, M. Erkelenz, E. Bernard, P. Courtin, S. Kulakauskas et al., Identification of the Asparagine Synthase Responsible for D-Asp Amidation in the Lactococcus lactis Peptidoglycan Interpeptide Crossbridge, Journal of Bacteriology, vol.191, issue.11, pp.3752-3757, 2009.
DOI : 10.1128/JB.00126-09

M. P. Velez, S. C. De-keersmaecker, and J. Vanderleyden, in the human gastrointestinal tract, FEMS Microbiology Letters, vol.276, issue.2, pp.140-148, 2007.
DOI : 10.1111/j.1574-6968.2007.00908.x

W. Vollmer, Structural variation in the glycan strands of bacterial peptidoglycan, FEMS Microbiology Reviews, vol.32, issue.2, pp.287-306, 2008.
DOI : 10.1139/m84-083

J. Walter, D. M. Loach, M. Alqumber, C. Rockel, C. Hermann et al., D-Alanyl ester depletion of teichoic acids in Lactobacillus reuteri 100-23 results in impaired colonization of the mouse gastrointestinal tract, Environmental Microbiology, vol.9, 2007.

J. Wan, K. Harmark, B. E. Davidson, A. J. Hillier, J. B. Gordon et al., Inhibition of Listeria monocytogenes by piscicolin 126 in milk and Camembert cheese manufactured with a thermophilic starter, Journal of Applied Microbiology, vol.82, issue.3, pp.273-280, 1997.
DOI : 10.1046/j.1365-2672.1997.00349.x