D. K. Aanen, P. Eggleton, C. Rouland-lefevre, T. Guldberg-froslev, S. Rosendahl et al., The evolution of fungus-growing termites and their mutualistic fungal symbionts, Proceedings of the, vol.99, pp.14887-92, 2002.

A. Bear, A. D. Jones, T. H. Kandeler, E. Boddy, and L. , Interactive effects of temperature and soil moisture on fungal-mediated wood decomposition and extracellular enzyme activity, Soil Biology and Biochemistry, 2014.

A. S. Adams, C. R. Currie, Y. Cardoza, K. D. Klepzig, and K. F. Raffa, Effects of symbiotic bacteria and tree chemistry on the growth and reproduction of bark beetle fungal symbionts, Canadian Journal of Forest Research, vol.39, pp.1133-1147, 2009.

E. Addis, G. .. Fleet, J. .. Cox, D. Kolak, and T. Leung, The growth, properties and interactions of yeasts and bacteria associated with the maturation of Camembert and blue-veined cheeses, International Journal of Food Microbiology, vol.69, pp.25-36, 2001.

M. Ahmad, J. N. Roberts, E. M. Hardiman, R. Singh, L. D. Eltis et al., Identification of DypB from Rhodococcus jostii RHA1 as a lignin peroxidase, Biochemistry, vol.50, pp.5096-107, 2011.

M. Ahmad, C. R. Taylor, D. Pink, K. Burton, D. Eastwood et al., Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders, Molecular BioSystems, vol.6, p.815, 2010.

D. B. Alexander and D. A. Zuberer, Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria, Biology and Fertility of Soils, vol.12, pp.39-45, 1991.

H. Alexandre, P. J. Costello, F. Remize, J. Guzzo, and M. Guilloux-benatier, Saccharomyces cerevisiae-Oenococcus oeni interactions in wine: current knowledge and perspectives, International journal of food microbiology, vol.93, pp.141-54, 2004.

S. D. Allison and J. B. Martiny, Resistance, resilience, and redundancy in microbial communities, Proceedings of the National Academy of Sciences of the United States of America, vol.105, pp.11512-11521, 2008.

P. Ander, K. K. Eriksson, and .. , Methanol formation during lignin degradation by Phanerochaete chrysosporium, Appl Microbiol Biotechnol, pp.96-102, 1985.

M. J. Anderson, A new method for non-parametric multivariate analysis of variance, Austral Ecology, vol.26, pp.32-46, 2001.

B. .. Andersson, L. Welinder, P. .. Olsson, S. Olsson, and T. Henrysson, Growth of inoculated white-rot fungi and their interactions with the bacterial community in soil contaminated with polycyclic aromatic hydrocarbons, as measured by phospholipid fatty acids, Bioresource Technology, vol.73, pp.29-36, 2000.

D. An, W. Im, H. Yang, D. Yang, and S. Lee, Dyella koreensis sp. nov., a beta-glucosidase-producing bacterium, International Journal of Systematic and Evolutionary Microbiology, vol.55, pp.1625-1628, 2005.

S. Antony-babu, A. Deveau, J. D. Van-nostrand, J. Zhou, F. Le-tacon et al., Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles, Environmental Microbiology, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01270208

F. S. Archibald, A new assay for lignin-type peroxidases employing the dye azure B, Appl. Envir. Microbiol, vol.58, pp.3110-3116, 1992.

L. Ausec, M. Zakrzewski, A. Goesmann, A. Schlüter, and I. Mandic-mulec, Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes. (ed O Lespinet), PloS one, vol.6, p.25724, 2011.

B. S. Ausmus, Regulation of wood decomposition rates by arthropod and annelid populations, Ecological Bulletins, vol.25, pp.180-192, 1977.

A. T. Austin and C. L. Ballaré, Dual role of lignin in plant litter decomposition in terrestrial ecosystems, Proceedings of the National Academy of Sciences of the United States of America, vol.107, pp.4618-4640, 2010.

A. T. Austin and L. Vivanco, Plant litter decomposition in a semi-arid ecosystem controlled by photodegradation, Nature, vol.442, pp.555-563, 2006.

M. P. Ayres, R. T. Wilkens, J. J. Ruel, M. J. Lombardero, and E. Vallery, Nitrogen budgets of phloem-feeding bark beetles with and without symbiotic fungi, Ecology, vol.81, pp.2198-2210, 2000.

P. Baldrian, Fungal laccases -occurrence and properties. FEMS microbiology reviews, vol.30, pp.215-257, 2006.

P. Baldrian, Enzymes of Saprotrophic Basidiomycetes, Ecology of Saprotrophic, vol.204, 2008.

U. K. Oxford,

P. Baldrian and B. Lindahl, Decomposition in forest ecosystems: after decades of research still novel findings, Fungal Ecology, vol.4, pp.359-361, 2011.

P. Baldrian and V. Valá?ková, Degradation of cellulose by basidiomycetous fungi, FEMS microbiology reviews, vol.32, pp.501-521, 2008.

C. C. Barford, S. C. Wofsy, M. L. Goulden, J. W. Munger, E. H. Pyle et al., Factors controlling long-and shortterm sequestration of atmospheric CO2 in a mid-latitude forest, Science, vol.294, pp.1688-91, 2001.

M. Barret, P. Frey-klett, M. Boutin, A. Guillerm-erckelboudt, F. Martin et al., The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp, New Phytologist, vol.181, pp.435-447, 2009.
URL : https://hal.archives-ouvertes.fr/inria-00359115

T. Bell, J. A. Newman, B. W. Silverman, S. L. Turner, and A. K. Lilley, The contribution of species richness and composition to bacterial services, Nature, vol.436, pp.1157-1160, 2005.

T. G. Benton, M. Solan, J. M. Travis, and S. M. Sait, Microcosm experiments can inform global ecological problems, Trends in Ecology & Evolution, vol.22, pp.516-521, 2007.

R. Berlemont and A. C. Martiny, Phylogenetic distribution of potential cellulases in bacteria, Applied and environmental microbiology, vol.79, pp.1545-54, 2013.

V. Bianciotto and P. Bonfante, Arbuscular mycorrhizal fungi: a specialised niche for rhizospheric and endocellular bacteria, Antonie van Leeuwenhoek, vol.81, pp.365-371, 2002.

D. Bieker, R. Kehr, G. Weber, and S. Rust, Non-destructive monitoring of early stages of white rot by Trametes versicolor in Fraxinus excelsior, Annals of Forest Science, vol.67, pp.210-210, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00883593

C. G. Björdal, T. Nilsson, and G. Daniel, Microbial decay of waterlogged archaeological wood found in Sweden Applicable to archaeology and conservation, International Biodeterioration & Biodegredation, vol.43, pp.63-73, 1999.

R. A. Blanchette, Screening wood decayed by white rot fungi for preferential lignin degradation, Applied and Environmental Microbiology, vol.48, p.647, 1984.

R. A. Blanchette, A review of microbial deterioration found in archaeological wood 205 from different environments, International Biodeterioration & Biodegradation, vol.46, pp.189-204, 2000.

R. A. Blanchette, T. A. Burnes, G. F. Leatham, and M. J. Effland, Selection of white-rot fungi for biopulping, Biomass, vol.15, pp.93-101, 1988.

R. A. Blanchette, B. W. Held, J. A. Jurgens, D. L. Mcnew, T. C. Harrington et al., Wood-Destroying Soft Rot Fungi in the Historic Expedition Huts of Antarctica, Appl. Environ. Microbiol, vol.70, pp.1328-1335, 2004.

J. Blomqvist, S. L. Leong, M. Sandgren, T. Lestander, and V. Passoth, Temperaturedependent changes in the microbial storage flora of birch and spruce sawdust, Biotechnology and applied biochemistry, vol.61, pp.58-64, 2014.

L. Boddy, Carbon dioxide release from decomposing wood: Effect of water content and temperature, Soil Biology and Biochemistry, vol.15, pp.501-510, 1983.

L. Boddy, Interspecific combative interactions between wood-decaying basidiomycetes, FEMS microbiology ecology, vol.31, pp.185-194, 2000.

L. Boddy and S. C. Watkinson, Wood decomposition, higher fungi, and their role in nutrient redistribution, Canadian Journal of Botany, vol.73, pp.1377-1383, 1995.

W. De-boer, L. Folman, P. Klein-gunnewiek, T. Svensson, D. Bastviken et al., Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood, Canadian Journal of Microbiology, vol.56, pp.380-388, 2010.

W. De-boer, L. B. Folman, R. C. Summerbell, and L. Boddy, Living in a fungal world: impact of fungi on soil bacterial niche development, FEMS Microbiology Reviews, vol.29, pp.795-811, 2005.

W. De-boer and A. Van-der-wal, Interactions between saprotrophic basidiomycetes and bacteria, Ecology, 2008.

&. P. Frankland and . Van-west, , pp.143-153

W. Boerjan, J. Ralph, and M. Baucher, Lignin Biosynthesis, Annual Review of Plant Biology, vol.54, pp.519-546, 2003.

F. G. Boersma, J. Warmink, F. Andreote, and J. D. Van-elsas, Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies, Applied and Environmental Microbiology, vol.75, pp.1979-1989, 2009.

P. Bonnarme and T. W. Jeffries, Mn(II) Regulation of Lignin Peroxidases and Manganese-Dependent Peroxidases from Lignin-Degrading White Rot Fungi, 1990.

, Envir. Microbiol, vol.56, pp.210-217

C. Bontemps, M. Toussaint, P. Revol, L. Hotel, M. Jeanbille et al., Taxonomic and functional diversity of Streptomyces in a forest soil, FEMS Microbiology Letters, vol.342, pp.157-167, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01655681

A. Botha, The importance and ecology of yeasts in soil, Soil Biology and Biochemistry, vol.43, pp.1-8, 2011.

R. S. Botting and C. Delong, Macrolichen and bryophyte responses to coarse woody debris characteristics in sub-boreal spruce forest, Forest Ecology and Management, vol.258, pp.85-94, 2009.

A. Bourdais, F. Bidard, D. Zickler, V. Berteaux-lecellier, P. Silar et al., Wood utilization is dependent on catalase activities in the filamentous fungus Podospora anserina, PloS one, vol.7, p.29820, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00695942

O. Bouriaud, N. Bréda, G. Le-moguédec, and G. Nepveu, Modelling variability of wood density in beech as affected by ring age, radial growth and climate, Trees, vol.18, pp.264-276, 2004.

M. A. Bradford, B. W. Watts, and C. A. Davies, Thermal adaptation of heterotrophic soil respiration in laboratory microcosms, Global Change Biology, vol.16, pp.1576-1588, 2010.

O. Braissant, E. P. Verrecchia, and M. Aragno, Is the contribution of bacteria to terrestrial carbon budget greatly underestimated?, Naturwissenschaften, vol.89, pp.366-70, 2002.

D. Bravo, G. Cailleau, S. Bindschedler, A. Simon, D. Job et al., Isolation of oxalotrophic bacteria able to disperse on fungal mycelium, FEMS microbiology letters, vol.348, pp.157-66, 2013.

J. A. Breznak, Intestinal microbiota of termites and other xylophagous insects. Annual review of microbiology, vol.36, pp.323-366, 1982.

M. E. Brown and M. C. Chang, Exploring bacterial lignin degradation, Current opinion in chemical biology, vol.19, pp.1-7, 2014.

V. Bucur, S. Garros, A. Navarrete, M. T. Troya, and R. Guyonnet, Kinetics of wood degradation by fungi with x-ray microdensitometric technique, Wood Science and Technology, vol.31, pp.383-389, 1997.
URL : https://hal.archives-ouvertes.fr/emse-00447672

T. D. Bugg, M. Ahmad, E. M. Hardiman, and R. Singh, The emerging role for bacteria in lignin degradation and bio-product formation, Current Opinion in Biotechnology, vol.22, pp.394-400, 2011.

H. Burdsall,

W. &-eslyn, A new Phanerochaete with a chrysosporium imperfect state, Mycotaxon, vol.1, pp.123-133, 1974.

B. L. Cantarel, P. M. Coutinho, C. Rancurel, T. Bernard, V. Lombard et al., The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics, Nucleic acids research, vol.37, pp.233-241, 2009.

S. R. Carpenter, Microcosm Experiments have Limited Relevance for Community and Ecosystem Ecology, Ecology, vol.77, p.677, 1996.

T. Caruso, Y. Chan, D. C. Lacap, M. C. Lau, C. P. Mckay et al., Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale, The ISME Journal, vol.5, pp.1406-1413, 2011.

F. Chaucheyras-durand, S. Masséglia, G. Fonty, and E. Forano, Influence of the composition of the cellulolytic flora on the development of hydrogenotrophic microorganisms, hydrogen utilization, and methane production in the rumens of gnotobiotically reared lambs, Applied and environmental microbiology, vol.76, pp.7931-7938, 2010.

J. Chave, Neutral theory and community ecology, Ecology Letters, vol.7, pp.241-253, 2004.

J. Chave, D. Coomes, S. Jansen, S. L. Lewis, N. G. Swenson et al., Towards a worldwide wood economics spectrum, Ecology Letters, vol.12, pp.351-66, 2009.

J. Chen and K. Chan, Genome Sequence of Dyella japonica Strain A8, a Quorum-Quenching Bacterium That Degrades N-Acylhomoserine Lactones, Isolated from Malaysian Tropical Soil, Journal of Bacteriology, vol.194, p.6331, 2012.

K. R. Clarke, Non-parametric multivariate analyses of changes in community structure, Australian Journal of Ecology, vol.18, pp.117-143, 1993.

C. A. Clausen, Bacterial associations with decaying wood: a review, International Biodeterioration & Biodegradation, vol.37, pp.101-107, 1996.

C. A. Clausen, W. Kenealy, and P. K. Lebow, Oxalate analysis methodology for decayed wood, International Biodeterioration & Biodegradation, vol.62, pp.372-375, 2008.

T. Coenye and P. Vandamme, Diversity and significance of Burkholderia species 208 occupying diverse ecological niches, Environmental Microbiology, vol.5, pp.719-729, 2003.

S. Compant, J. Nowak, T. Coenye, C. Clément, and E. Ait-barka, Diversity and occurrence of Burkholderia spp. in the natural environment, FEMS microbiology reviews, vol.32, pp.607-633, 2008.

J. H. Cornelissen, U. Sass-klaassen, L. Poorter, K. Van-geffen, and R. S. Van-logtestijn,

J. Hal, L. Goudzwaard, F. J. Sterck, R. K. Klaassen, G. T. Freschet et al., , 2012.

, Ambio, vol.41, pp.231-276

W. K. Cornwell, J. H. Cornelissen, S. D. Allison, J. Bauhus, P. Eggleton et al., Plant traits and wood fates across the globe: rotted, burned, or consumed?, Global Change Biology, vol.15, pp.2431-2449, 2009.

R. L. Crawford, T. K. Kirk, J. M. Harkin, and E. Mccoy, Bacterial cleavage of an arylglycerol-beta-aryl ether bond, Applied Microbiology, vol.25, p.322, 1973.

T. W. Crowther, L. Boddy, and T. Hefin-jones, Functional and ecological consequences of saprotrophic fungus-grazer interactions, The ISME journal, vol.6, 1992.

C. R. Currie, A community of ants, fungi, and bacteria: a multilateral approach to studying symbiosis, Annual review of microbiology, vol.55, pp.357-80, 2001.

T. A. Day, E. T. Zhang, and C. T. Ruhland, Exposure to solar UV-B radiation accelerates mass and lignin loss of Larrea tridentata litter in the Sonoran Desert, Plant Ecology, vol.193, pp.185-194, 2007.

K. M. Deangelis, P. D'haeseleer, D. Chivian, J. L. Fortney, J. Khudyakov et al., Complete genome sequence of Enterobacter lignolyticus SCF1, Standards in Genomic Sciences, vol.5, pp.69-85, 2011.

I. Delalibera, J. Handelsman, and K. F. Raffa, Contrasts in Cellulolytic Activities of Gut Microorganisms Between the Wood Borer, Saperda vestita (Coleoptera: Cerambycidae), and the Bark Beetles, Ips pini and Dendroctonus frontalis (Coleoptera: Curculionidae), 2005.

, Environmental Entomology, vol.34, pp.541-547

C. Delbès, L. Ali-mandjee, and M. Montel, Monitoring bacterial communities in raw 209 milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses, Applied and Environmental Microbiology, vol.73, pp.1882-91, 2007.

T. Z. Desantis, P. Hugenholtz, K. Keller, E. L. Brodie, N. Larsen et al., NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes, Nucleic Acids Research, vol.34, pp.394-399, 2006.

T. Z. Desantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie et al., Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Applied and Environmental Microbiology, vol.72, pp.5069-5072, 2006.

A. Deveau, C. Brulé, B. Palin, D. Champmartin, P. Rubini et al., Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomycorrhizal fungus Laccaria bicolor S238N and the helper bacterium Pseudomonas fluorescens BBc6R8, Environmental microbiology reports, vol.2, pp.560-568, 2010.

R. C. Dewar and M. G. Cannell, Carbon sequestration in the trees, products and soils of forest plantations: an analysis using UK examples, Tree Physiology, vol.11, pp.49-71, 1992.

F. Dewey, Y. Wong, and R. Seery, Bacteria associated with Stagonospora (Septoria) nodorum increase pathogenicity of the fungus, New Phytologist, vol.144, pp.489-497, 1999.

D. Dlauchy, C. Lee, and G. Péter, Spencermartinsiella ligniputridi sp. nov., a yeast species isolated from rotten wood, International journal of systematic and evolutionary microbiology, vol.62, pp.2799-804, 2012.

P. K. Donnelly, J. A. Entry, D. L. Crawford, and K. Cromack, Cellulose and lignin degradation in forest soils: response to moisture, temperature, and acidity, Microbial Ecology, vol.20, pp.289-295, 1990.

A. Dresler-nurmi, S. Kaijalainen, K. Lindström, and A. Hatakka, Grouping of lignin degrading corticioid fungi based on RFLP analysis of 18S rDNA and ITS regions, Mycological Research, vol.103, pp.990-996, 1999.

B. L. Dreyfus, C. Elmerich, and Y. R. Dommergues, Free-Living Rhizobium Strain Able To Grow on N2 as the Sole Nitrogen Source, Appl. Envir. Microbiol, vol.45, pp.711-713, 1983.

P. Dürre, T. Richard, L. Eltis, A. Kushmaro, and E. L. Madsen, Microorganisms and their roles in fundamental biogeochemical cycles, Current Opinion in Biotechnology, vol.22, p.210, 2011.

M. V. Dutton, C. S. Evans, P. T. Atkey, and D. A. Wood, Oxalate production by Basidiomycetes, including the white-rot species Coriolus versicolor and Phanerochaete chrysosporium, Applied Microbiology and Biotechnology, vol.39, pp.5-10, 1993.

. W. En113 and . Preservatives, Test Method for Determining the Protective Effectiveness against Wood Destroying Basidiomycetes. Determination of the Toxic Values. CEN. European Committee for Standardization, 1996.

E. Espagne, O. Lespinet, F. Malagnac, C. Da-silva, O. Jaillon et al., The genome sequence of the model ascomycete fungus Podospora anserina, vol.9, p.77, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00286300

K. Fackler, M. Schmutzer, L. Manoch, M. Schwanninger, B. Hinterstoisser et al., Evaluation of the selectivity of white rot isolates using near infrared spectroscopic techniques, Enzyme and Microbial Technology, vol.41, pp.881-887, 2007.

K. Fackler and M. Schwanninger, How spectroscopy and microspectroscopy of degraded wood contribute to understand fungal wood decay, Applied microbiology and biotechnology, vol.96, pp.587-99, 2012.

K. Fackler, J. S. Stevanic, T. Ters, B. Hinterstoisser, M. Schwanninger et al., Localisation and characterisation of incipient brown-rot decay within spruce wood cell walls using FT-IR imaging microscopy, Enzyme and microbial technology, vol.47, pp.257-267, 2010.

P. G. Falkowski, T. Fenchel, and E. F. Delong, The microbial engines that drive Earth's biogeochemical cycles, Science, vol.320, pp.1034-1043, 2008.

F. A. Fekete, V. Chandhoke, and J. Jellison, Iron-Binding Compounds Produced by Wood-Decaying Basidiomycetes, Appl. Envir. Microbiol, vol.55, pp.2720-2722, 1989.

T. R. Filley, R. A. Blanchette, E. Simpson, and M. L. Fogel, Nitrogen cycling by wood decomposing soft-rot fungi in the, vol.98, pp.13346-50, 2001.

D. Floudas, M. Binder, R. Riley, K. Barry, R. A. Blanchette et al.,

A. Copeland, P. M. Coutinho, R. P. Vries, . De, P. Ferreira et al., The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes, vol.336, pp.1715-1719, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01268324

L. B. Folman, P. J. Klein-gunnewiek, L. Boddy, and W. De-boer, Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil, FEMS Micriobiology Ecology, vol.63, pp.181-191, 2008.

V. R. Franceschi, P. Krokene, E. Christiansen, and T. Krekling, Anatomical and chemical defenses of conifer bark against bark beetles and other pests, The New phytologist, vol.167, pp.353-75, 2005.

J. C. Frankland, Fungal succession -unravelling the unpredictable, Mycological Research, vol.102, pp.1-15, 1998.

G. T. Freschet, J. T. Weedon, R. Aerts, J. R. Van-hal, and J. H. Cornelissen, Interspecific differences in wood decay rates: insights from a new short-term method to study long-term wood decomposition, Journal of Ecology, vol.100, pp.161-170, 2012.

C. Freyburger, F. Longuetaud, F. Mothe, T. Constant, and J. Leban, Measuring wood density by means of X-ray computer tomography, Annals of Forest Science, vol.66, pp.804-804, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00883536

P. Frey, P. Frey-klett, J. Garbaye, O. Berge, and T. Heulin, Metabolic and Genotypic Fingerprinting of Fluorescent Pseudomonads Associated with the Douglas Fir-Laccaria bicolor Mycorrhizosphere, Applied and environmental microbiology, vol.63, pp.1852-60, 1997.

P. Frey-klett, P. Burlinson, A. Deveau, M. Barret, M. Tarkka et al., Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists, Microbiology and Molecular Biology Reviews, vol.75, pp.583-609, 2011.

P. Frey-klett, M. Chavatte, M. Clausse, S. Courrier, C. Le-roux et al., Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads, The New Phytologist, vol.165, pp.317-345, 2005.

P. Frey-klett, J. Garbaye, and M. Tarkka, The mycorrhiza helper bacteria revisited, New Phytologist, vol.176, pp.22-36, 2007.

T. Fukami, I. Dickie, J. Wilkie, B. C. Paulus, D. Park et al., Assembly history dictates ecosystem functioning: evidence from wood decomposer communities, Ecology letters, vol.13, pp.675-84, 2010.

Y. Fukasawa, T. Osono, and H. Takeda, Microfungus communities of Japanese beech logs at different stages of decay in a cool temperate deciduous forest, Canadian Journal of Forest Research, vol.39, pp.1606-1614, 2009.

Y. Fukasawa, T. Osono, and H. Takeda, Wood decomposing abilities of diverse lignicolous fungi on nondecayed and decayed beech wood, Mycologia, vol.103, pp.474-82, 2011.

S. Furuno, K. Päzolt, C. Rabe, T. R. Neu, H. Harms et al., Fungal mycelia allow chemotactic dispersal of polycyclic aromatic hydrocarbon-degrading bacteria in water-unsaturated systems, Environmental microbiology, vol.12, pp.1391-1398, 2010.

G. M. Gadd, Fungi in Biogeochemical Cycles, 2006.

M. E. Gallo, A. Porras-alfaro, K. J. Odenbach, and R. L. Sinsabaugh, Photoacceleration of plant litter decomposition in an arid environment, Soil Biology and Biochemistry, vol.41, pp.1433-1441, 2009.

D. Gao, Y. Zeng, X. Wen, and Y. Qian, Competition strategies for the incubation of white rot fungi under non-sterile conditions, Process Biochemistry, vol.43, pp.937-944, 2008.

J. L. Garland and A. L. Mills, Classification and Characterization of Heterotrophic Microbial Communities on the Basis of Patterns of Community-Level Sole-CarbonSource, Applied and Environmental Microbiology, vol.57, pp.2351-2359, 1991.

T. Giesecke, T. Hickler, T. Kunkel, M. T. Sykes, and R. H. Bradshaw, Towards an understanding of the Holocene distribution of Fagus sylvatica L, Journal of Biogeography, vol.34, pp.118-131, 2006.

R. L. Gilbertson, North American wood-rotting fungi that cause brown rots, Mycotaxon, vol.12, pp.372-416, 1981.

M. Gindl and S. Tschegg, Significance of the Acidity of Wood to the Surface Free Energy Components of Different Wood Species, Langmuir, vol.18, pp.3209-3212, 2002.

F. M. Gírio, C. Fonseca, F. Carvalheiro, L. C. Duarte, S. Marques et al., Hemicelluloses for fuel ethanol: A review, Bioresource Technology, vol.101, pp.4775-4800, 2010.

I. J. Good, The population frequencies of species and the estimation of population parameters, Biometrika, vol.40, pp.237-264, 1953.

N. J. Gotelli, Null model analysis of species co-occurrence patterns, Ecology, vol.81, pp.2606-2621, 2000.

H. Greaves, Micromorphology of the bacterial attack of wood, Wood Science and Technology, vol.3, pp.150-166, 1969.

H. Greaves, The bacterial factor in wood decay, Wood Science and Technology, vol.5, pp.6-16, 1971.

F. Green and T. L. Highley, Mechanism of brown-rot decay: Paradigm or paradox, International Biodeterioration & Biodegradation, vol.39, pp.113-124, 1997.

S. J. Grove, Saproxylic insect ecology and the sustainable management of forests, Annual Review of Ecology and Systematics, vol.33, pp.1-23, 2002.

M. Grube, M. Cardinale, J. V. De-castro, H. Müller, and G. Berg, Species-specific structural and functional diversity of bacterial communities in lichen symbioses, The ISME Journal, vol.3, pp.1105-1115, 2009.

M. Guggiari, R. Bloque, M. Aragno, E. Verrecchia, D. Job et al., Experimental calcium-oxalate crystal production and dissolution by selected wood-rot fungi, International Biodeterioration & Biodegradation, vol.65, pp.803-809, 2011.

F. Guillén, M. J. Mart?nez, C. Muñoz, and A. T. Mart?nez, Quinone Redox Cycling in?? in? in??the Ligninolytic Fungus Pleurotus eryngii Leading to Extracellular Production of, 1997.

, Superoxide Anion Radical. Archives of Biochemistry and Biophysics, vol.339, pp.190-199

X. Guo, H. Zhu, and F. Bai, Candida cellulosicola sp. nov., a xylose-utilizing anamorphic yeast from rotten wood, International journal of systematic and evolutionary microbiology, vol.62, pp.242-247, 2012.

S. Güsewell and M. O. Gessner, N : P ratios influence litter decomposition and 214, 2009.

, colonization by fungi and bacteria in microcosms, Functional Ecology, vol.23, pp.211-219

A. Gutierrez, L. Caramelo, A. Prieto, M. J. Martinez, and A. T. Martinez, Anisaldehyde production and aryl-alcohol oxidase and dehydrogenase activities in ligninolytic fungi of the genus Pleurotus, Appl. Envir. Microbiol, vol.60, pp.1783-1788, 1994.

K. E. Hammel, A. N. Kapich, K. A. Jensen, and Z. C. Ryan, Reactive oxygen species as agents of wood decay by fungi, Enzyme and Microbial Technology, vol.30, pp.445-453, 2002.

M. E. Harmon, J. F. Franklin, F. J. Swanson, P. Sollins, S. V. Gregory et al., Ecology of coarse woody debris in temperate ecosystems, Advances in Ecological Research, vol.15, pp.133-302, 1986.

M. Hartmann, C. G. Howes, D. Vaninsberghe, H. Yu, D. Bachar et al., Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests, The ISME Journal, vol.6, pp.2199-2218, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01546179

R. Ten-have and P. J. Teunissen, Oxidative mechanisms involved in lignin degradation by white-rot fungi, Chemical Reviews, vol.101, pp.3397-3414, 2001.

D. S. Heckman, D. M. Geiser, B. R. Eidell, R. L. Stauffer, N. L. Kardos et al., Molecular evidence for the early colonization of land by fungi and plants, Science, vol.293, pp.1129-1162, 2001.

Z. He, Y. Deng, J. D. Van-nostrand, Q. Tu, M. Xu et al., GeoChip 3.0 as a highthroughput tool for analyzing microbial community composition, structure and functional activity, The ISME journal, vol.4, pp.1167-79, 2010.

M. G. Van-der-heijden, J. N. Klironomos, M. Ursic, P. Moutoglis, R. Streitwolf-engel et al., Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity, Nature, vol.396, pp.69-72, 1998.

V. Hervé, J. Derr, S. Douady, M. Quinet, L. Moisan et al., Multiparametric Analyses Reveal the pH-Dependence of Silicon Biomineralization in Diatoms, PLoS ONE, vol.7, p.46722, 2012.

V. Hervé, F. Mothe, C. Freyburger, E. Gelhaye, and P. Frey-klett, Density mapping of decaying wood using X-ray computed tomography, International Biodeterioration &, p.215, 2014.

, Biodegradation, vol.86, pp.358-363

V. Hervé, X. Le-roux, S. Uroz, E. Gelhaye, and P. Frey-klett, Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay, Environmental Microbiology, 2014.

W. E. Hillis, Science and Technology, vol.18, pp.281-293, 1984.

S. J. Hodge and G. F. Peterken, Deadwood in British forests: priorities and a strategy, Forestry, vol.71, pp.99-112, 1998.

M. Hofrichter, Review: lignin conversion by manganese peroxidase (MnP), vol.30, pp.454-466, 2002.

D. N. Hon and .. , Degradative effects of ultraviolet light and acid rain on wood surface quality, Wood and Fiber Science, vol.26, pp.185-191, 1994.

D. U. Hooper, F. S. Chapin, J. J. Ewel, A. Hector, P. Inchausti et al., Effects of biodiversity on ecosystem functioning: a consensus of current knowledge, Ecological Monographs, vol.75, pp.3-35, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00188090

B. Hoppe, T. Kahl, P. Karasch, T. Wubet, J. Bauhus et al., Network Analysis Reveals Ecological Links between N-Fixing Bacteria and WoodDecaying Fungi, PLoS ONE, vol.9, p.88141, 2014.

S. P. Hubbell, The Unified Neutral Theory of Biodiversity and Biogeography, 2001.

A. Hukka and H. A. Viitanen, A mathematical model of mould growth on wooden material, Wood Science and Technology, vol.33, pp.475-485, 1999.

J. Hulcr and R. R. Dunn, The sudden emergence of pathogenicity in insect-fungus symbioses threatens naive forest ecosystems, Proceedings. Biological sciences / The Royal Society, vol.278, pp.2866-73, 2011.

J. Hulcr, N. R. Rountree, S. E. Diamond, L. L. Stelinski, N. Fierer et al., Mycangia of ambrosia beetles host communities of bacteria, Microbial ecology, vol.64, pp.784-93, 2012.

F. Hyodo, I. Tayasu, T. Inoue, J. I. Azuma, T. Kudo et al., , p.216, 2003.

, symbiotic fungi in lignin degradation and food provision for fungus-growing termites (Macrotermitinae: Isoptera), Functional Ecology, vol.17, pp.186-193

D. J. Jamieson, Saccharomyces cerevisiae has distinct adaptive responses to both hydrogen peroxide and menadione, Journal of Bacteriology, vol.174, pp.6678-6681, 1992.

J. E. Johansen, S. J. Binnerup, N. Kroer, and L. Mølbak, Luteibacter rhizovicinus gen. nov., sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizosphere of barley (Hordeum vulgare L.). International journal of systematic and evolutionary microbiology, vol.55, pp.2285-91, 2005.

T. Johjima, N. Itoh, M. Kabuto, F. Tokimura, T. Nakagawa et al., Direct interaction of lignin and lignin peroxidase from Phanerochaete chrysosporium, p.96, 1989.

H. Jung, L. N. Ten, K. Kim, D. S. An, W. Im et al., Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea, International journal of systematic and evolutionary microbiology, vol.59, pp.460-465, 2009.

K. Junninen and A. Komonen, Conservation ecology of boreal polypores: A review, Biological Conservation, vol.144, pp.11-20, 2011.

I. Kamei, T. Yoshida, D. Enami, and S. Meguro, Coexisting Curtobacterium bacterium promotes growth of white-rot fungus Stereum sp, Current Microbiology, vol.64, pp.173-178, 2012.

P. Kämpfer, N. Lodders, and E. Falsen, Luteibacter anthropi sp. nov., isolated from human blood, and reclassification of Dyella yeojuensis Kim et al. 2006 as Luteibacter yeojuensis comb. nov. International journal of systematic and evolutionary microbiology, vol.59, pp.2884-2891, 2009.

J. B. Kauffman, D. L. Cummings, D. E. Ward, and R. Babbitt, Fire in the Brazilian Amazon: 1. Biomass, nutrient pools, and losses in slashed primary forests, Oecologia, vol.104, pp.397-408, 1995.

P. J. Kersten, Glyoxal oxidase of Phanerochaete chrysosporium: its characterization and activation by lignin peroxidase, Proceedings of the National Academy of Sciences, vol.87, pp.2936-2940, 1990.

N. Khammar, G. Martin, K. Ferro, D. Job, M. Aragno et al., Use of the frc gene as a molecular marker to characterize oxalate-oxidizing bacterial abundance and 217 diversity structure in soil, Journal of Microbiological Methods, vol.76, pp.120-127, 2009.

O. Kim, Y. Cho, K. Lee, S. Yoon, M. Kim et al., Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species, International Journal of Systematic and Evolutionary Microbiology, vol.62, pp.716-721, 2012.

D. Kim, A. Kim, R. N. Kim, S. Nam, A. Kang et al., Comparative analysis of expressed sequence tags from the white-rot fungi (Phanerochaete chrysosporium), Molecules and Cells, vol.29, pp.131-144, 2010.

R. Kirby, A. I. Laskin, J. W. Bennett, and G. M. Gadd, Actinomycetes and Lignin Degradation, Advances in Applied Microbiology, pp.125-168, 2005.

T. K. Kirk and R. L. Farrell, Enzymatic "combustion": the microbial degradation of lignin, Annual Reviews in Microbiology, vol.41, pp.465-505, 1987.

S. Kohlmeier, T. H. Smits, R. M. Ford, C. Keel, H. Harms et al., Taking the Fungal Highway: Mobilization of Pollutant-Degrading Bacteria by Fungi, Environmental Science & Technology, vol.39, pp.4640-4646, 2005.

T. H. De-koker, K. K. Nakasone, J. Haarhof, H. H. Burdsall, and B. J. Janse, Phylogenetic relationships of the genus Phanerochaete inferred from the internal transcribed spacer region, Mycological Research, vol.107, pp.1032-1040, 2003.

T. H. De-koker, J. Zhao, D. Cullen, and B. J. Janse, Biochemical and molecular characterization of South African strains of Phanerochaete chrysosporium, Mycological Research, vol.102, pp.88-92, 1998.

C. Kong, L. Wang, P. Li, Y. Qu, H. Tang et al., Genome Sequence of Dyella ginsengisoli Strain LA-4, an Efficient Degrader of Aromatic Compounds, Genome announcements, vol.1, pp.961-974, 2013.

T. W. Ko, S. L. Stephenson, R. Jeewon, S. Lumyong, and K. D. Hyde, Molecular diversity of myxomycetes associated with decaying wood and forest floor leaf litter, 2009.

, Mycologia, vol.101, pp.592-598

T. Kost, N. Stopnisek, K. Agnoli, L. Eberl, and L. Weisskopf, Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root 218 colonization of lupin and maize by Burkholderia phytofirmans, Frontiers in microbiology, vol.4, p.421, 2014.

A. Kubartová, E. Ottosson, A. Dahlberg, and J. Stenlid, Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing, Molecular Ecology, vol.21, pp.4514-4532, 2012.

R. Laiho and C. E. Prescott, Decay and nutrient dynamics of coarse woody debris in northern coniferous forests: a synthesis, Canadian Journal of Forest Research, vol.34, pp.763-777, 2004.

S. H. Lamlom and R. A. Savidge, A reassessment of carbon content in wood: variation within and between 41 North American species, Biomass and Bioenergy, vol.25, pp.381-388, 2003.

E. T. Landy, J. I. Mitchell, S. Hotchkiss, and R. A. Eaton, Bacterial diversity associated with archaeological waterlogged wood: Ribosomal RNA clone libraries and denaturing gradient gel electrophoresis (DGGE), International Biodeterioration & Biodegradation, vol.61, pp.106-116, 2008.

M. A. Larkin, G. Blackshields, N. P. Brown, R. Chenna, P. A. Mcgettigan et al.,

D. G. Higgins, Clustal W and Clustal X version 2.0, Bioinformatics, vol.23, pp.2947-2948, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00206210

L. F. Larrondo, R. Vicuna, and D. Cullen, Phanerochaete chrysosporium genomics. Applied Mycology and Biotechnology, vol.5, pp.315-352, 2005.

K. Larsson, Re-thinking the classification of corticioid fungi, Mycological Research, vol.111, pp.1040-1063, 2007.

J. Lecomte, M. St-arnaud, and M. Hijri, Isolation and identification of soil bacteria growing at the expense of arbuscular mycorrhizal fungi, FEMS Microbiology Letters, vol.317, pp.43-51, 2011.

C. S. Lee, Y. Jung, S. Park, T. Oh, and J. Yoon, Lysinibacillus xylanilyticus sp. nov., a xylan-degrading bacterium isolated from forest humus, International journal of systematic and evolutionary microbiology, vol.60, pp.281-287, 2010.

S. Lekounougou, S. Mounguengui, S. Dumarçay, C. Rose, P. E. Courty et al., Initial stages of Fagus sylvatica wood colonization by the white-rot basidiomycete Trametes versicolor: Enzymatic 219 characterization, International Biodeterioration & Biodegradation, vol.61, pp.287-293, 2008.

A. Leonowicz, N. Cho, J. Luterek, A. Wilkolazka, M. Wojtas-wasilewska et al., Fungal laccase: properties and activity on lignin, Journal of Basic Microbiology, vol.41, pp.185-227, 2001.

E. Lequy, C. Calvaruso, S. Conil, and M. Turpault, Atmospheric particulate deposition in temperate deciduous forest ecosystems: Interactions with the canopy and nutrient inputs in two beech stands of Northeastern France. The Science of the total environment, vol.487, pp.206-221, 2014.

A. Levasseur, E. Drula, V. Lombard, P. M. Coutinho, and B. Henrissat, Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes, Biotechnology for biofuels, vol.6, p.41, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01268121

J. H. Leveau and G. M. Preston, Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction, The New phytologist, vol.177, pp.859-876, 2008.

J. H. Leveau, S. Uroz, and W. De-boer, The bacterial genus Collimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments, Environmental Microbiology, vol.12, pp.281-292, 2010.

A. Levy, B. J. Chang, L. K. Abbott, J. Kuo, G. Harnett et al., Invasion of Spores of the Arbuscular Mycorrhizal Fungus Gigaspora decipiens by Burkholderia spp, Applied and Environmental Microbiology, vol.69, pp.6250-6256, 2003.

N. G. Lewis and E. Yamamoto, Lignin: occurrence, biogenesis and biodegradation. Annual review of plant physiology and plant molecular biology, vol.41, pp.455-96, 1990.

C. Liers, R. Ullrich, K. T. Steffen, A. Hatakka, and M. Hofrichter, Mineralization of 14C-labelled synthetic lignin and extracellular enzyme activities of the wood-colonizing ascomycetes Xylaria hypoxylon and Xylaria polymorpha, Applied Microbiology and Biotechnology, vol.69, pp.573-579, 2006.

Y. W. Lim, K. S. Baik, J. Chun, K. H. Lee, W. J. Jung et al., Accurate delimitation of Phanerochaete chrysosporium and Phanerochaete sordida by specific PCR primers and cultural approach, Journal of Microbiology and Biotechnology, vol.17, pp.468-473, 2007.

Y. W. Lim, S. K. Baik, S. K. Han, B. S. Kim, and K. S. Bae, Burkholderia sordidicola sp. nov., isolated from the white-rot fungus Phanerochaete sordida, International Journal, p.220, 2003.

, Systematic and Evolutionary Microbiology, vol.53, pp.1631-1636

V. Lindahl and L. R. Bakken, Evaluation of methods for extraction of bacteria from soil, FEMS Microbiology Ecology, vol.16, pp.135-142, 1995.

J. Li, H. Yuan, and J. Yang, Bacteria and lignin degradation, Frontiers of Biology in China, vol.4, pp.29-38, 2008.

F. Longuetaud, F. Mothe, B. Kerautret, A. Krähenbühl, L. Hory et al., Automatic knot detection and measurements from X-ray CT images of wood: A review and validation of an improved algorithm on softwood samples, Computers and Electronics in Agriculture, vol.85, pp.77-89, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00780761

F. Longuetaud, F. Mothe, and J. Leban, Automatic detection of the heartwood/sapwood boundary within Norway spruce (Picea abies (L.) Karst.) logs by means of CT images, Computers and Electronics in Agriculture, vol.58, pp.100-111, 2007.
URL : https://hal.archives-ouvertes.fr/hal-01194968

M. Loreau, S. Naeem, P. Inchausti, J. Bengtsson, J. P. Grime et al., Biodiversity and ecosystem functioning: current knowledge and future challenges, Science, vol.294, pp.804-812, 2001.

C. Lozupone, M. Hamady, and R. Knight, UniFrac -an online tool for comparing microbial community diversity in a phylogenetic context, BMC bioinformatics, vol.7, p.371, 2006.

C. Lozupone and R. Knight, UniFrac: a New Phylogenetic Method for Comparing Microbial Communities, Applied and Environmental Microbiology, vol.71, pp.8228-8235, 2005.

L. R. Lynd, P. J. Weimer, W. H. Van-zyl, and I. S. Pretorius, Microbial Cellulose Utilization: Fundamentals and Biotechnology, Microbiology and Molecular Biology Reviews, vol.66, pp.506-577, 2002.

N. Macchioni, S. Palanti, and P. Rozenberg, Measurements of fungal wood decay on Scots pine and beech by means of X-ray microdensitometry, Wood Science and Technology, vol.41, pp.417-426, 2007.

K. M. Machado, D. R. Matheus, and V. L. Bononi, Ligninolytic enzymes production and Remazol Brilliant Blue R decolorization by tropical Brazilian basidiomycetes fungi, Brazilian Journal of Microbiology, vol.36, pp.246-252, 2005.

J. Mackensen, J. Bauhus, and E. Webber, Decomposition rates of coarse woody debris -A review with particular emphasis on Australian tree species, Australian Journal, p.221, 2003.

, Botany, vol.51, p.27

K. Martin and J. M. Eadie, Nest webs: A community-wide approach to the management and conservation of cavity-nesting forest birds, Forest Ecology and Management, vol.115, pp.243-257, 1999.

D. Martinez, L. F. Larrondo, N. Putnam, M. D. Gelpke, K. Huang et al., Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78, Nature biotechnology, vol.22, pp.695-700, 2004.

S. Martinez and K. K. Nakasone, The genus Phanerochaete (Corticiaceae, Basidiomycotina) sensu lato in Uruguay, Sydowia, vol.57, pp.94-101, 2005.

A. T. Martínez, M. Speranza, F. J. Ruiz-dueñas, P. Ferreira, S. Camarero et al., Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin, International Microbiology, vol.8, pp.195-204, 2005.

G. Martin, M. Guggiari, D. Bravo, J. Zopfi, G. Cailleau et al., Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction, Environmental Microbiology, vol.14, pp.2960-2970, 2012.

E. Masai, Y. Katayama, and M. Fukuda, Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds, Biotechnology, and Biochemistry, vol.71, pp.1-15, 2007.

Y. Mathieu, Diversité Écologique et Fonctionnelle Des Champignons Décomposeurs Du Bois : L'influence Du Substrat de La Communauté À L'enzyme, 2012.

Y. Mathieu, A. Dassé, I. Lebayon, M. Kutnik, L. Harvengt et al., High-throughput sequencing highlighted contrasted pioneer fungal communities associated to coniferous and deciduous wood preservation assays, The 44th Annual Meeting of the IRG, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01579804

Y. Mathieu, E. Gelhaye, S. Dumarçay, P. Gérardin, L. Harvengt et al., Selection and validation of enzymatic activities as functional markers in wood biotechnology and fungal ecology, Journal of microbiological methods, vol.92, pp.157-63, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01268184

F. Mba-medie, G. J. Davies, M. Drancourt, and B. Henrissat, Genome analyses highlight the different biological roles of cellulases, Nature Reviews Microbiology, vol.10, pp.227-261, 2012.

T. S. Mccay, Use of woody debris by cotton mice (Peromyscus gossypinus) in a southeastern pine forest, Journal of Mammalogy, vol.81, pp.527-535, 2000.

I. R. Mcdonald and J. C. Murrell, The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs, Applied and environmental microbiology, vol.63, pp.3218-3224, 1997.

R. Mcdonald, H. J. Schreier, and J. E. Watts, Phylogenetic analysis of microbial communities in different regions of the gastrointestinal tract in Panaque nigrolineatus, a wood-eating fish, PLoS One, vol.7, p.48018, 2012.

P. Meerts, Mineral nutrient concentrations in sapwood and heartwood: a literature review, Annals of Forest Science, vol.59, pp.713-722, 2002.
URL : https://hal.archives-ouvertes.fr/hal-00883663

S. Meidute, F. Demoling, and E. Bååth, Antagonistic and synergistic effects of fungal and bacterial growth in soil after adding different carbon and nitrogen sources, Soil Biology and Biochemistry, vol.40, pp.2334-2343, 2008.

A. Michaelsen, G. Piñar, and F. Pinzari, Molecular and microscopical investigation of the microflora inhabiting a deteriorated Italian manuscript dated from the thirteenth century, Microbial ecology, vol.60, pp.69-80, 2010.

H. Mikesková, C. Novotný, K. Svobodová, and ?. Novotný, Interspecific interactions in mixed microbial cultures in a biodegradation perspective, Applied Microbiology and Biotechnology, vol.95, pp.861-70, 2012.

C. Mille-lindblom, H. J. Fischer, and L. Tranvik, Antagonism between bacteria and fungi: substrate competition and a possible tradeoff between fungal growth and tolerance towards bacteria, Oikos, vol.113, pp.233-242, 2006.

C. Mille-lindblom and L. J. Tranvik, Antagonism between bacteria and fungi on decomposing aquatic plant litter, Microbial ecology, vol.45, pp.173-82, 2003.

J. Møller, M. Miller, and A. Kjøller, Fungal-bacterial interaction on beech leaves: influence on decomposition and dissolved organic carbon quality, Soil Biology and Biochemistry, vol.31, pp.367-374, 1999.

M. Morel, E. Meux, Y. Mathieu, A. Thuillier, K. Chibani et al., , vol.223

E. Gelhaye, Xenomic networks variability and adaptation traits in wood decaying fungi, Microbial Biotechnology, vol.6, pp.248-263, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01268111

E. Mowat, R. Rajendran, C. Williams, E. Mcculloch, B. Jones et al., Pseudomonas aeruginosa and their small diffusible extracellular molecules inhibit Aspergillus fumigatus biofilm formation, FEMS microbiology letters, vol.313, pp.96-102, 2010.

U. G. Mueller and N. Gerardo, Fungus-farming insects: multiple origins and diverse evolutionary histories, Proceedings of the National Academy of Sciences of the United States of America, vol.99, pp.15247-15256, 2002.

A. C. Murray and S. Woodward, Temporal changes in functional diversity of culturable bacteria populations in Sitka spruce stumps, Forest Pathology, vol.37, pp.217-235, 2007.

R. Nazir, J. A. Warmink, D. C. Voordes, H. H. Van-de-bovenkamp, and J. D. Van-elsas, Inhibition of mushroom formation and induction of glycerol release-ecological strategies of Burkholderia terrae BS001 to create a hospitable niche at the fungus Lyophyllum sp, strain Karsten. Microbial ecology, vol.65, pp.245-54, 2013.

M. Noll, A. Naumann, F. Ferrero, and M. Malow, Exothermic processes in industrialscale piles of chipped pine-wood are linked to shifts in gamma-, alphaproteobacterial and fungal ascomycete communities, International Biodeterioration & Biodegradation, vol.64, pp.629-637, 2010.

E. E. Nuccio, A. Hodge, J. Pett-ridge, D. J. Herman, P. K. Weber et al., An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition, Environmental Microbiology, vol.15, pp.1870-1881, 2013.

M. Ohkuma, Termite symbiotic systems: efficient bio-recycling of lignocellulose, Applied microbiology and biotechnology, vol.61, pp.1-9, 2003.

D. Oh, J. J. Scott, C. R. Currie, and J. Clardy, Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp, Organic letters, vol.11, pp.633-639, 2009.

J. Oksanen, F. G. Blanchet, R. Kindt, P. Legendre, R. B. O'hara et al., Community Ecology Package. R package version, vol.1, 2012.

A. Ostrofsky, J. Jellison, K. T. Smith, and W. C. Shortle, Changes in cation 224 concentrations in red spruce wood decayed by brown rot and white rot fungi, Canadian Journal of Forest Research, vol.27, pp.567-571, 1997.

L. Otjen and R. A. Blanchette, A discussion of microstructural changes in wood during decomposition by white rot basidiomycetes, Canadian Journal of Botany, vol.64, pp.905-911, 1986.

J. D. Palmer, D. E. Soltis, and M. W. Chase, The plant tree of life: an overview and some points of view, American journal of botany, vol.91, pp.1437-1482, 2004.

M. ;. Palviainen, R. ;. Laiho, H. Mäkinen, and L. Finér, Do decomposing Scots pine, Norway spruce, and silver birch stems retain nitrogen?, Canadian Journal of Forest Research, vol.38, pp.3047-3055, 2008.

E. Parmasto, R. H. Nilsson, and H. Larsson, Cortbase version 2 -extensive updates of a nomenclatural database for corticioid fungi (Hymenomycetes), PhyloInformatics, vol.5, pp.1-7, 2004.

L. P. Partida-martinez, I. Groth, I. Schmitt, W. Richter, M. Roth et al., Burkholderia rhizoxinica sp. nov. and Burkholderia endofungorum sp. nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus, International Journal of Systematic and Evolutionary Microbiology, vol.57, pp.2583-2590, 2007.

H. Pereira, J. Graça, and J. C. Rodrigues, Wood chemistry in relation to quality. Wood quality and its biological basis, pp.30-52, 2003.

J. Pérez, J. Muñoz-dorado, T. De-la-rubia, and J. Martínez, Biodegradation and biological treatments of cellulose, hemicellulose and lignin: an overview, International microbiology : the official journal of the Spanish Society for Microbiology, vol.5, pp.53-63, 2002.

G. Péter, D. Dlauchy, J. Tornai-lehoczki, M. Suzuki, and C. P. Kurtzman, Spencermartinsiella europaea gen. nov., sp. nov., a new member of the family, 2011.

, Trichomonascaceae. International journal of systematic and evolutionary microbiology, vol.61, pp.993-1000

G. Péter, J. Tornai-lehoczki, L. Fülöp, and D. Dlauchy, Six new methanol assimilating yeast species from wood material, Antonie van Leeuwenhoek, vol.84, pp.147-159, 2003.

G. Piñar, K. Sterflinger, and F. Pinzari, Unmasking the measles-like parchment discoloration: molecular and microanalytical approach, 2014.

J. Pinheiro, D. Bates, S. Debroy, D. Sarkar, and . &-r-core-team, Linear and Nonlinear Mixed Effects Models, 2011.

J. Preston, A. D. Smith, E. J. Schofield, A. V. Chadwick, M. A. Jones et al., The effects of Mary rose conservation treatment on iron oxidation processes and microbial communities contributing to Acid production in marine archaeological timbers, PloS one, vol.9, p.84169, 2014.

L. Prewitt, Y. Kang, M. L. Kakumanu, and M. Williams, Fungal and Bacterial Community Succession Differs for Three Wood Types during Decay in a Forest Soil, 2014.

J. I. Prosser, Replicate or lie, Environmental Microbiology, vol.12, pp.1806-1810, 2010.

E. Pruesse, C. Quast, K. Knittel, B. M. Fuchs, W. Ludwig et al., SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB, Nucleic Acids Research, vol.35, pp.7188-7196, 2007.

Y. Pu, M. Kosa, U. C. Kalluri, G. A. Tuskan, and A. J. Ragauskas, Challenges of the utilization of wood polymers: how can they be overcome?, Applied microbiology and biotechnology, vol.91, pp.1525-1561, 2011.

V. S. Pylro, A. L. De-freitas, W. C. Otoni, I. R. Da-silva, A. C. Borges et al., Calcium oxalate crystals in eucalypt ectomycorrhizae: morphochemical characterization. (ed A Guerrero-Hernandez), PloS one, vol.8, p.67685, 2013.

J. Quinto, M. Á. Marcos-garcía, C. Díaz-castelazo, V. Rico-gray, H. Brustel et al., Breaking down complex Saproxylic communities: understanding subnetworks structure and implications to network robustness, PloS one, vol.7, p.45062, 2012.

U. Råberg, N. Terziev, and G. Daniel, Degradation of Scots pine and beech wood exposed in four test fields used for testing of wood preservatives, International Biodeterioration & Biodegradation, vol.79, pp.20-27, 2013.

C. Radtke, W. Cook, and A. Anderson, Factors affecting antagonism of the growth of Phanerochaete chrysosporium by bacteria isolated from soils, Applied Microbiology and Biotechnology, vol.41, pp.274-280, 1994.

T. Rajala, M. Peltoniemi, J. Hantula, R. Mäkipää, and T. Pennanen, RNA reveals a succession of active fungi during the decay of Norway spruce logs, Fungal Ecology, vol.4, pp.437-448, 2011.

T. Rajala, M. Peltoniemi, T. Pennanen, and R. Mäkipää, Fungal community dynamics, p.226, 2012.

, in relation to substrate quality of decaying Norway spruce ( Picea abies [L.] Karst.) logs in boreal forests, FEMS microbiology ecology, vol.81, pp.494-505

M. Ramachandra, D. L. Crawford, and G. Hertel, Characterization of an extracellular lignin peroxidase of the lignocellulolytic actinomycete Streptomyces viridosporus, Applied and environmental microbiology, vol.54, p.3057, 1988.

M. Rappé, S. S. Giovannoni, and M. S. Rappe, The uncultured microbial majority, Annual Reviews in Microbiology, vol.57, pp.369-394, 2003.

, R: A Language and Environment for Statistical Computing, R Development Core Team, 2013.

P. B. Reich and J. Oleksyn, Global patterns of plant leaf N and P in relation to temperature and latitude, Proceedings of the National Academy of Sciences of the United States of America, vol.101, pp.11001-11006, 2004.

N. M. Reid, S. L. Addison, L. J. Macdonald, and G. Lloyd-jones, Biodiversity of active and inactive bacteria in the gut flora of wood-feeding huhu beetle larvae (Prionoplus reticularis), Applied and Environmental Microbiology, vol.77, pp.7000-7006, 2011.

P. Renvall, Community structure and dynamics of wood-rotting Basidiomycetes on decomposing conifer trunks in northern Finland, Karstenia, vol.35, pp.1-51, 1995.

J. M. Robinson, Lignin, land plants, and fungi: Biological evolution affecting Phanerozoic oxygen balance, Geology, vol.18, pp.607-610, 1990.

R. Couto, S. Toca-herrera, and J. L. , Industrial and biotechnological applications of laccases: a review, Biotechnology advances, vol.24, pp.500-513, 2006.

A. M. Romaní, H. Fischer, C. Mille-lindblom, and L. J. Tranvik, Interactions of bacteria and fungi on decomposing litter: differential extracellular enzyme activities, Ecology, vol.87, pp.2559-2569, 2006.

J. Romano and R. Kolter, Pseudomonas-Saccharomyces interactions: influence of fungal metabolism on bacterial physiology and survival, Journal of bacteriology, vol.187, pp.940-948, 2005.

L. M. Romero, T. J. Smith, and J. W. Fourqurean, Changes in mass and nutrient content of wood during decomposition in a south Florida mangrove forest, Journal of Ecology, vol.93, pp.618-631, 2005.

J. De-rosnay, Le Macroscope, Vers Une Vision Globale, 1975.

F. J. Ruiz-dueñas, S. Camarero, M. Pérez-boada, M. J. Martínez, and A. T. Martínez, A new versatile peroxidase from Pleurotus, Biochemical Society Transactions, vol.29, p.116, 2001.

N. Sahin, Oxalotrophic bacteria, Research in Microbiology, vol.154, pp.399-407, 2003.

J. G. Savory, Breakdown of timber by ascomycetes and fungi imperfecti, Annals of Applied Biology, vol.41, pp.336-347, 1954.

S. Schellenberger, S. Kolb, and H. L. Drake, Metabolic responses of novel cellulolytic and saccharolytic agricultural soil bacteria to oxygen, Environmental Microbiology, vol.12, pp.845-861, 2010.

P. D. Schloss, A high-throughput DNA sequence aligner for microbial ecology studies, PloS One, vol.4, p.8230, 2009.

P. D. Schloss, D. Gevers, and S. L. Westcott, Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies, PloS One, vol.6, p.27310, 2011.

P. D. Schloss, S. L. Westcott, T. Ryabin, J. R. Hall, M. Hartmann et al., Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Applied and Environmental Microbiology, vol.75, pp.7537-7541, 2009.

O. Schmidt, Indoor wood-decay basidiomycetes: damage, causal fungi, physiology, identification and characterization, prevention and control, Mycological Progress, vol.6, pp.281-281, 2007.

C. A. Schneider, W. S. Rasband, and K. W. Eliceiri, NIH Image to ImageJ: 25 years of image analysis, Nature Methods, vol.9, pp.671-675, 2012.

C. L. Schoch, K. A. Seifert, S. Huhndorf, V. Robert, J. L. Spouge et al., Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi, vol.109, pp.6241-6247, 2012.

T. D. Schowalter, Heterogeneity of decomposition and nutrient dynamics of oak (Quercus) logs during the first 2 years of decomposition, Canadian Journal of Forest Research, vol.22, pp.161-166, 1992.

T. D. Schowalter, Y. L. Zhang, and T. E. Sabin, Decomposition and nutrient dynamics of oak Quercus spp. logs after five years of decomposition, Ecography, vol.21, pp.3-10, 1998.

M. Schwanninger, B. Hinterstoisser, C. Gradinger, K. Messner, and K. Fackler, Examination of spruce wood biodegraded by Ceriporiopsis subvermispora using near and mid infrared spectroscopy, Journal of Near Infrared Spectroscopy, vol.12, pp.397-409, 2004.

F. W. Schwarze, Wood decay under the microscope, Fungal Biology Reviews, vol.21, pp.133-170, 2007.

F. W. Schwarze, J. Engels, and C. Mattheck, Fungal Strategies of Wood Decay in Trees, 2004.

J. J. Scott, D. Oh, M. C. Yuceer, K. D. Klepzig, J. Clardy et al., Bacterial protection of beetle-fungus mutualism, Science, p.63, 2008.

F. Seigle-murandi, P. Guiraud, J. Croize, E. Falsen, and K. L. Eriksson, Bacteria Are Omnipresent on Phanerochaete chrysosporium Burdsall. Applied and Environmental Microbiology, vol.62, pp.2477-2481, 1996.

A. Shade and J. Handelsman, Beyond the Venn diagram: the hunt for a core microbiome, Environmental Microbiology, vol.14, pp.4-12, 2012.

L. Sheneman, J. Evans, and J. A. Foster, Clearcut: a fast implementation of relaxed neighbor joining, Bioinformatics, vol.22, pp.2823-2824, 2006.

T. Shi, J. K. Fredrickson, and D. L. Balkwill, Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface, Journal of Industrial Microbiology and Biotechnology, vol.26, pp.283-289, 2001.

M. Shimada, D. Ma, Y. Akamatsu, and T. Hattori, A proposed role of oxalic acid in wood decay systems of wood-rotting basidiomycetes, FEMS Microbiology Reviews, vol.13, pp.285-295, 1994.

S. Shim and K. Kawamoto, Enzyme production activity of Phanerochaete chrysosporium and degradation of pentachlorophenol in a bioreactor, Water research, vol.36, pp.4445-4454, 2002.

A. P. Singh, Role of electron microscopy in understanding deterioration of wooden objects of cultural heritage, COST Meeting Hamburg, 2007.

A. P. Singh and J. A. Butcher, Bacterial degradation of wood cell walls: a review of 229 degradation patterns, Journal of the Institute of Wood Science, vol.12, pp.143-157, 1991.

P. Singh, O. Sulaiman, R. Hashim, P. F. Rupani, and L. C. Peng, Biopulping of lignocellulosic material using different fungal species: a review, Reviews in Environmental Science and Biotechnology, vol.9, pp.141-151, 2010.

R. L. Sinsabaugh, R. K. Antibus, A. E. Linkins, C. A. Mcclaugherty, L. Rayburn et al., Wood decomposition over a first-order watershed: Mass loss as a function of lignocellulase activity, Soil Biology and Biochemistry, vol.24, pp.743-749, 1992.

R. L. Sinsabaugh and J. J. Shah, Ecoenzymatic Stoichiometry and Ecological Theory, Evolution, and Systematics, vol.43, pp.313-343, 2012.

R. L. Sinsabaugh, B. H. Hill, and J. J. Shah, Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment, Nature, vol.462, pp.795-803, 2009.

R. L. Sinsabaugh, C. L. Lauber, M. N. Weintraub, B. Ahmed, S. D. Allison et al., Stoichiometry of soil enzyme activity at global scale, Ecology Letters, vol.11, pp.1252-64, 2008.

J. ?najdr, P. Dobiá?ová, T. V?trovský, V. Valá?ková, A. Alawi et al., Saprotrophic basidiomycete mycelia and their interspecific interactions affect the spatial distribution of extracellular enzymes in soil, FEMS Microbiology Ecology, vol.78, pp.80-90, 2011.

H. Son, J. Yang, E. Yi, Y. Park, K. Won et al., Dyella kyungheensis sp. nov., isolated from the soil of a cornus fruit field, International journal of systematic and evolutionary microbiology, vol.63, pp.3807-3811, 2013.

J. D. Spears and K. Lajtha, The imprint of coarse woody debris on soil chemistry in the Western Oregon Cascades, Biogeochemistry, vol.71, pp.163-175, 2004.

E. Srebotnik and K. Messner, A Simple Method That Uses Differential Staining and Light Microscopy To Assess the Selectivity of Wood Delignification by White Rot Fungi, Applied and Environmental Microbiology, vol.60, pp.1383-1386, 1994.

A. Stamatakis, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, vol.22, pp.2688-2690, 2006.

E. J. Stewart, Growing unculturable bacteria, Journal of Bacteriology, vol.194, p.230, 2012.

P. Stewart, J. Gaskell, and D. Cullen, A Homokaryotic Derivative of a Phanerochaete chrysosporium Strain and Its Use in Genomic Analysis of Repetitive Elements, Applied and Environmental Microbiology, vol.66, pp.1629-1633, 2000.

J. N. Stockland, J. Siitonen, and B. G. Jonsson, , 2012.

N. Stopnisek, N. Bodenhausen, B. Frey, N. Fierer, L. Eberl et al., Genuswide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations, Environmental microbiology, 2013.

M. Stursová, L. Zif?áková, M. B. Leigh, R. Burgess, and P. Baldrian, Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers, FEMS microbiology ecology, vol.80, pp.735-781, 2012.

A. Sundquist, S. Bigdeli, R. Jalili, M. L. Druzin, S. Waller et al., Bacterial flora-typing with targeted, chip-based Pyrosequencing, BMC Microbiology, vol.7, p.108, 2007.

H. Sun, E. Terhonen, R. Kasanen, and F. O. Asiegbu, Diversity and Community Structure of Primary Wood-Inhabiting Bacteria in Boreal Forest, Geomicrobiology Journal, vol.31, pp.315-324, 2014.

H. Suzuki, J. Macdonald, K. Syed, A. Salamov, C. Hori et al.,

K. Igarashi, J. S. Yadav, I. Grigoriev, and E. R. Master, Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize, BMC genomics, p.444, 2012.

K. Takahashi and Y. Hada, Distribution of Myxomycetes on coarse woody debris of Pinus densiflora at different decay stages in secondary forests of western Japan, 2009.

, Mycoscience, vol.50, pp.253-260

R. M. Teather and P. J. Wood, Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen, Applied and Environmental Microbiology, vol.43, pp.777-80, 1982.

B. Tian, Q. Huang, Y. Xu, C. Wang, R. Lv et al., Microbial community structure and diversity in a native forest wood-decomposed hollow-stump, p.231, 2009.

, ecosystem. World Journal of Microbiology and Biotechnology, vol.26, pp.233-240

M. Tien and T. K. Kirk, Lignin-Degrading Enzyme from the Hymenomycete Phanerochaete chrysosporium Burds, Science, vol.221, pp.661-663, 1983.

G. Tokuda and H. Watanabe, Hidden cellulases in termites: revision of an old hypothesis, Biology letters, vol.3, pp.336-345, 2007.

Y. K. Toljander, B. D. Lindahl, L. Holmer, and N. O. Högberg, Environmental fluctuations facilitate species co-existence and increase decomposition in communities of wood decay fungi, Oecologia, vol.148, pp.625-631, 2006.

K. Tornberg, E. Baath, and S. Olsson, Fungal growth and effects of different wood decomposing fungi on the indigenous bacterial community of polluted and unpolluted soils, Biology and Fertility of Soils, vol.37, pp.190-197, 2003.

M. M. Tuason and J. M. Arocena, Calcium oxalate biomineralization by Piloderma fallax in response to various levels of calcium and phosphorus, Applied and environmental microbiology, vol.75, pp.7079-85, 2009.

U. Tuor, K. Winterhalter, and A. Fiechter, Enzymes of white-rot fungi involved in lignin degradation and ecological determinants for wood decay, Journal of Biotechnology, vol.41, pp.1-17, 1995.

A. Ulrich, G. Klimke, and S. Wirth, Diversity and activity of cellulose-decomposing bacteria, isolated from a sandy and a loamy soil after long-term manure application, Microbial Ecology, vol.55, pp.512-534, 2008.

M. D. Ulyshen and T. L. Wagner, Quantifying arthropod contributions to wood decay (ed H Muller-Landau), Methods in Ecology and Evolution, vol.4, pp.345-352, 2013.

S. Um, A. Fraimout, P. Sapountzis, D. Oh, and M. Poulsen, The fungus-growing termite Macrotermes natalensis harbors bacillaene-producing Bacillus sp. that inhibit potentially antagonistic fungi, Scientific reports, vol.3, p.3250, 2013.

S. Uroz, C. Calvaruso, M. P. Turpault, J. C. Pierrat, C. Mustin et al., Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil, Applied and environmental microbiology, vol.73, pp.3019-3046, 2007.
URL : https://hal.archives-ouvertes.fr/hal-01195006

S. Uroz, P. Oger, E. Morin, and P. Frey-klett, Distinct ectomycorrhizospheres share similar bacterial communities as revealed by pyrosequencing-based analysis of 16S 232, 2012.

, rRNA genes. Applied and Environmental Microbiology, vol.78, pp.3020-3024

M. Ushio, T. Miki, and T. C. Balser, A coexisting fungal-bacterial community stabilizes soil decomposition activity in a microcosm experiment, PloS One, vol.8, p.80320, 2013.

V. Valásková, W. De-boer, P. J. Gunnewiek, M. Pospísek, and P. Baldrian, Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood, The ISME journal, vol.3, pp.1218-1239, 2009.

V. Valá?ková, J. ?najdr, B. Bittner, T. Cajthaml, V. Merhautová et al., Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest, Soil Biology and Biochemistry, vol.39, pp.2651-2660, 2007.

M. C. Vanderwel, J. R. Malcolm, S. M. Smith, and N. Islam, Insect community composition and trophic guild structure in decaying logs from eastern Canadian pinedominated forests, Forest Ecology and Management, vol.225, pp.190-199, 2006.

D. Vaninsberghe, M. Hartmann, G. R. Stewart, and W. W. Mohn, Isolation of a Substantial Proportion of Forest Soil Bacterial Communities Detected via Pyrotag Sequencing, Applied and environmental microbiology, vol.79, pp.2096-2104, 2013.

R. L. Vannette, M. L. Gauthier, and T. Fukami, Nectar bacteria, but not yeast, weaken a plant-pollinator mutualism, Proceedings. Biological sciences / The Royal Society, vol.280, 2013.

T. V?trovský, K. T. Steffen, and P. Baldrian, Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria, PLoS ONE, vol.9, p.89108, 2014.

A. A. Visser, T. Nobre, C. R. Currie, D. K. Aanen, and M. Poulsen, Exploring the potential for actinobacteria as defensive symbionts in fungus-growing termites, Microbial Ecology, vol.63, pp.975-85, 2012.

A. V. Vorob'ev, W. De-boer, L. B. Folman, P. L. Bodelier, N. V. Doronina et al., Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene, International Journal of Systematic and Evolutionary Microbiology, vol.59, pp.2538-2545, 2009.

A. Van-der-wal, W. Boer, . De, W. Smant, and J. A. Veen, , p.233, 2007.

, fragments in soil is influenced by size, vertical position, nitrogen availability and soil origin, Plant and Soil, vol.301, pp.189-201

Q. Wang, G. M. Garrity, J. M. Tiedje, and J. R. Cole, Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Applied and Environmental Microbiology, vol.73, pp.5261-5267, 2007.

L. Wang, G. Wang, S. Li, and J. Jiang, Luteibacter jiangsuensis sp. nov.: a methamidophos-degrading bacterium isolated from a methamidophos-manufacturing factory, Current microbiology, vol.62, pp.289-95, 2011.

J. A. Warmink and J. D. Van-elsas, Migratory Response of Soil Bacteria to Lyophyllum sp, Strain Karsten in Soil Microcosms. Applied and Environmental Microbiology, vol.75, pp.2820-2830, 2009.

J. A. Warmink, R. Nazir, and J. D. Van-elsas, Universal and species-specific bacterial "fungiphiles" in the mycospheres of different basidiomycetous fungi, Environmental Microbiology, vol.11, pp.300-312, 2009.

J. Watts, R. Mcdonald, R. Daniel, and H. Schreier, Examination of a Culturable Microbial Population from the Gastrointestinal Tract of the Wood-Eating Loricariid Catfish Panaque nigrolineatus, Diversity, vol.5, pp.641-656, 2013.

J. T. Weedon, W. K. Cornwell, J. H. Cornelissen, A. E. Zanne, C. Wirth et al., Global meta-analysis of wood decomposition rates: a role for trait variation among tree species?, Ecology Letters, vol.12, pp.45-56, 2009.

Q. Wei, B. Leblon, and A. La-rocque, On the use of X-ray computed tomography for determining wood properties: a review, Canadian Journal of Forest Research, vol.41, pp.2120-2140, 2011.

P. Weißhaupt, A. Naumann, W. Pritzkow, and M. Noll, Nitrogen uptake of Hypholoma fasciculare and coexisting bacteria, Mycological Progress, vol.12, pp.283-290, 2012.

J. E. Winandy and J. J. Morrell, Relationship between incipient decay, strength, and chemical composition of Douglas-fir heartwood, Wood and Fiber Science, vol.25, pp.278-288, 1993.

H. L. Woo, T. C. Hazen, B. A. Simmons, and K. M. Deangelis, Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils, Systematic and applied microbiology, vol.37, pp.60-67, 2014.

S. Wu, Nine new species of Phanerochaete from Taiwan, Mycological Research, vol.234, pp.1126-1132, 1998.

S. Wu, H. R. Nilsson, C. Chen, S. Yu, and N. Hallenberg, The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota), Fungal Diversity, vol.42, pp.107-118, 2010.

J. Wu, X. Yu, and H. Zhou, The saproxylic beetle assemblage associated with different host trees in Southwest China, Insect Science, vol.15, pp.251-261, 2008.

A. Vanden-wymelenberg, J. Gaskell, M. Mozuch, P. Kersten, G. Sabat et al., Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression, Applied and environmental microbiology, vol.75, pp.4058-68, 2009.

C. Xie and A. Yokota, Dyella japonica gen. nov., sp. nov., a gamma-proteobacterium isolated from soil, International journal of systematic and evolutionary microbiology, vol.55, pp.753-759, 2005.

D. J. Yelle, J. Ralph, F. Lu, and K. E. Hammel, Evidence for cleavage of lignin by a brown rot basidiomycete, Environmental Microbiology, vol.10, pp.1844-1849, 2008.

Y. Yin, X. Mao, J. Yang, X. Chen, F. Mao et al., dbCAN: a web resource for automated carbohydrate-active enzyme annotation, Nucleic acids research, vol.40, pp.445-51, 2012.

G. M. Zaitsev, I. V. Tsitko, F. A. Rainey, Y. A. Trotsenko, J. S. Uotila et al., New aerobic ammonium-dependent obligately oxalotrophic bacteria: description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov, International Journal of Systematic Bacteriology, vol.48, pp.151-163, 1998.

J. Zak, M. Willig, D. Moorhead, and H. Wildman, Functional diversity of microbial communities: A quantitative approach, Soil Biology and Biochemistry, vol.26, pp.1101-1108, 1994.

H. B. Zhang, M. X. Yang, and R. Tu, Unexpectedly high bacterial diversity in decaying wood of a conifer as revealed by a molecular method, International Biodeterioration & Biodegradation, vol.62, pp.471-474, 2008.

H. B. Zhang, M. X. Yang, R. Tu, L. Gao, and Z. W. Zhao, Fungal communities in decaying sapwood and heartwood of a conifer Keteleeria evelyniana, Current microbiology, vol.56, pp.358-62, 2008.

W. Zugmaier, R. Bauer, and F. Oberwinkler, Mycoparasitism of some Tremella species, Mycologia, vol.86, pp.49-56, 1994.