123 4.3.4 Vers l'échelle macroscopique : pertinence de l'hypothèse d'équilibre de masse local, p.126 ,
URL : https://hal.archives-ouvertes.fr/hal-01133610
Modeling multiphase migration of organic chemicals in groundwater systems-a review and assessment, Environmental Health Perspectives, vol.83, pp.143-148, 1989. ,
Calculation of the effective properties describing active dispersion in porous media: from simple to complex unit cells, Advances in Water Resources, vol.24, issue.3-4, pp.423-438, 2001. ,
DOI : 10.1016/S0309-1708(00)00065-8
Biofilm comprising phototrophic, diazotrophic, and hydrocarbon-utilizing bacteria: a promising consortium in the bioremediation of aquatic hydrocarbon pollutants, Environmental Science and Pollution Research, vol.18, issue.2, pp.3252-3262 ,
DOI : 10.1016/j.copbio.2007.04.006
Possible involvement of the division cycle in dispersal of Escherichia coli from biofilms., Journal of Bacteriology, vol.172, issue.3, pp.1667-1669, 1990. ,
DOI : 10.1128/jb.172.3.1667-1669.1990
A Multidimensional Multispecies Continuum Model for Heterogeneous Biofilm Development, Bulletin of Mathematical Biology, vol.69, issue.7, pp.765-789, 2007. ,
DOI : 10.1007/s11538-007-9212-2
Three-dimensional biofilm model with individual cells and continuum EPS matrix, Biotechnology and Bioengineering, vol.91, issue.5, pp.961-979, 2006. ,
DOI : 10.1099/00221287-147-11-2897
Investigating the pore-scale mechanisms of microbial enhanced oil recovery, Journal of Petroleum Science and Engineering, vol.94, issue.95, pp.155-164, 2012. ,
DOI : 10.1016/j.petrol.2012.06.031
Influence d'une phase microbienne sur le comportement d'un polluant en conditions multiphasiques, Thèse de doctorat, pp.126-135, 2015. ,
Potential commercial applications of microbial surfactants, Applied Microbiology and Biotechnology, vol.53, issue.5, pp.495-508, 2000. ,
DOI : 10.1007/s002530051648
Control of development of biofilms in industrial process water, Juillet US Patent, vol.3, 2006. ,
Predicting dense nonaqueous phase liquid dissolution using a simplified source depletion model parameterized with partitioning tracers, Water Resources Research, vol.72, issue.5, p.7414, 2008. ,
DOI : 10.1016/j.jconhyd.2003.11.002
Multidimensional modelling to investigate interspecies hydrogen transfer in anaerobic biofilms, Water Research, vol.40, issue.16, pp.3099-3108, 2006. ,
DOI : 10.1016/j.watres.2006.06.014
Generic modelling of cooperative growth patterns in bacterial colonies, Nature, vol.368, issue.6466, pp.46-49, 1994. ,
DOI : 10.1038/368046a0
3D finite element model of biofilm detachment using real biofilm structures from CLSM data, Biotechnology and Bioengineering, vol.91, issue.1, pp.177-186, 2009. ,
DOI : 10.1002/bit.22235
Biofilm development within a larval rearing tank of the tropical rock lobster, Panulirus ornatus, Aquaculture, vol.260, issue.1-4, pp.27-38, 2006. ,
DOI : 10.1016/j.aquaculture.2006.06.023
Use of quorum sensing inhibitors to interfere with biofilm formation and development in Burkholderia multivorans and Burkholderia cenocepacia, Research in Microbiology, vol.160, issue.2, pp.144-151, 2009. ,
DOI : 10.1016/j.resmic.2008.12.003
Dissolution of residual tetrachloroethylene in fractional wettability porous media: correlation development and application, Journal of Contaminant Hydrology, vol.45, issue.1-2, pp.35-61, 2000. ,
DOI : 10.1016/S0169-7722(00)00118-2
Relationships among air-water interfacial area, capillary pressure, and water saturation for a sandy porous medium, Water Resources Research, vol.267, issue.10, pp.3501-3511, 2006. ,
DOI : 10.1016/S0022-1694(02)00157-9
Biofilm formation and persistence, 2000. ,
The effects of pH, ionic strength and organic phase on the bacterial adhesion to hydrocarbons (BATH) test, International Journal of Pharmaceutics, vol.99, issue.2-3, pp.93-98, 1993. ,
DOI : 10.1016/0378-5173(93)90350-O
Biofilms and their consequences, with particular reference to hygiene in the food industry, Journal of Applied Bacteriology, vol.46, issue.6, pp.499-511, 1993. ,
DOI : 10.1080/08927019209378252
Biofilm detachment mechanisms in a liquid-fluidized bed, Biotechnology and Bioengineering, vol.62, issue.5, pp.499-506, 1991. ,
DOI : 10.1002/bit.260380508
Attached microbial growths???II. Frictional resistance due to microbial slimes, Water Research, vol.7, issue.9, pp.1249-1258, 1973. ,
DOI : 10.1016/0043-1354(73)90002-X
Analytical closed-form solutions for assessing pumping cycles, times, and costs required for NAPL remediation, Environmental Geology, vol.24, issue.10, pp.1381-1388, 2008. ,
DOI : 10.1111/j.1745-6592.1997.tb01285.x
Biofilm Formation and Control in Food Processing Facilities, Comprehensive Reviews in Food Science and Food Safety, vol.29, issue.7, pp.22-32, 2003. ,
DOI : 10.1111/j.1574-6976.2000.tb00565.x
Monitoring biofilm detachment under dynamic changes in shear stress using laser-based particle size analysis and mass fractionation, Water Science, vol.47, pp.69-76, 2003. ,
Estimating mass discharge from dense nonaqueous phase liquid source zones using upscaled mass transfer coefficients: An evaluation using multiphase numerical simulations, Water Resources Research, vol.72, issue.3, 2006. ,
DOI : 10.1016/j.jconhyd.2003.11.002
Possible factors controlling the effectiveness of bioenhanced dissolution of non-aqueous phase tetrachloroethene Advances in Water Ressources, pp.601-615, 2004. ,
Solubilization of PAH mixtures by three different anionic surfactants, Environmental Pollution, vol.118, issue.3, pp.307-313, 2002. ,
DOI : 10.1016/S0269-7491(01)00304-9
Biofouling and Biocorrosion in Industrial Water Systems, Critical Reviews in Microbiology, vol.131, issue.3, pp.213-232, 2005. ,
DOI : 10.1007/BF00411187
The role of the biofilm matrix in structural development, Mathematical Medicine and Biology, vol.21, issue.2, pp.147-166, 2004. ,
DOI : 10.1093/imammb/21.2.147
Cellular automata models of microbial colonies. Binary, computing in microbiology, pp.191-193, 1992. ,
How Bacteria Stick, Scientific American, vol.238, issue.1, pp.86-95, 1978. ,
DOI : 10.1038/scientificamerican0178-86
Microbial Biofilms, Annual Review of Microbiology, vol.49, issue.1, pp.711-745, 1994. ,
DOI : 10.1146/annurev.mi.49.100195.003431
The Bacterial Glycocalyx in Nature and Disease, Annual Review of Microbiology, vol.35, issue.1, pp.299-324, 1981. ,
DOI : 10.1146/annurev.mi.35.100181.001503
Mixed???species colonization of solid surfaces in laboratory biofilms, Biofouling, vol.54, issue.1, pp.23-34, 1991. ,
DOI : 10.3109/10408418209113562
Interfacial area measurements for unsaturated flow through a porous medium, Water Resources Research, vol.53, issue.10, pp.12413-12423, 2004. ,
DOI : 10.1103/PhysRevE.53.1516
Pore-scale characteristics of multiphase flow in porous media: A comparison of air???water and oil???water experiments, Advances in Water Resources, vol.29, issue.2, pp.227-238, 2006. ,
DOI : 10.1016/j.advwatres.2005.03.021
Etude du couplage hydrodynamique/croissance des biofilms, pp.26-64, 2014. ,
The Involvement of Cell-to-Cell Signals in the Development of a Bacterial Biofilm, Science, vol.280, issue.5361, pp.280295-298, 1998. ,
DOI : 10.1126/science.280.5361.295
Imaging biofilm in porous media using X-ray computed microtomography, Journal of Microscopy, vol.11, issue.3, pp.15-25 ,
DOI : 10.1117/1.2209962
Effects of biofilm structures on oxygen distribution and mass transport, Biotechnology and Bioengineering, vol.36, issue.11, pp.1131-1138, 1994. ,
DOI : 10.1103/PhysRev.111.1201
Microbial biofilms in intertidal systems: an overview, Continental Shelf Research, vol.20, issue.10-11, pp.10-111257, 2000. ,
DOI : 10.1016/S0278-4343(00)00022-4
Effect of Permeable Biofilm on Micro- And Macro-Scale Flow and Transport in Bioclogged Pores, Environmental Science & Technology, vol.47, issue.19, pp.4711092-11098 ,
DOI : 10.1021/es402596v
Growth limiting conditions and denitrification govern extent and frequency of volume detachment of biofilms, Chemical Engineering Journal, vol.218, pp.368-375, 2013. ,
DOI : 10.1016/j.cej.2012.11.061
URL : https://hal.archives-ouvertes.fr/hal-00875873
Stratification in the cohesion of biofilms grown under various environmental conditions, Water Research, vol.42, issue.8-9, pp.2102-2110, 2008. ,
DOI : 10.1016/j.watres.2007.11.016
Microbial production of surfactants and their commercial potential, Microbiology and Molecular Biology Reviews, vol.91, pp.47-64, 1997. ,
Development of a pore network simulation model to study nonaqueous phase liquid dissolution, Water Resources Research, vol.29, issue.10, pp.439-454, 2000. ,
DOI : 10.1023/A:1006501308769
Finger formation in biofilm layers, SIAM Journal on Applied Mathematics, vol.62, issue.17, pp.853-869, 2001. ,
Cell division : parameter values and the process, Escherichia coli and Salmonella typhimurium, 1996. ,
A two-dimensional continuum model of biofilm growth incorporating fluid flow and shear stress based detachment, Biotechnology and Bioengineering, vol.196, issue.41-44, pp.92-104, 2009. ,
DOI : 10.2140/camcos.2006.1.207
Coupled Cellular Models for Biofilm Growth and Hydrodynamic Flow in a Pipe, International Journal for Multiscale Computational Engineering, vol.3, issue.4, pp.499-516, 2005. ,
DOI : 10.1615/IntJMultCompEng.v3.i4.70
A New Deterministic Spatio-Temporal Continuum Model for Biofilm Development, Journal of Theoretical Medicine, vol.3, issue.3, pp.161-175, 2001. ,
DOI : 10.1080/10273660108833072
A three-dimensional numerical study on the correlation of spatial structure, hydrodynamic conditions, and mass transfer and conversion in biofilms, Chemical Engineering Science, vol.55, issue.24, pp.6209-6222, 2000. ,
DOI : 10.1016/S0009-2509(00)00169-X
A coupled, pore-scale model for methanogenic microbial activity in underground hydrogen storage, Advances in Water Resources, vol.61, pp.74-85, 2013. ,
DOI : 10.1016/j.advwatres.2013.09.004
URL : https://hal.archives-ouvertes.fr/hal-01301169
Biofilm growth pattern in honeycomb monolith packings: Effect of shear rate and substrate transport limitations, Catalysis Today, vol.105, issue.3-4, pp.448-454, 2005. ,
DOI : 10.1016/j.cattod.2005.06.051
Influence of detachment on substrate removal and microbial ecology in a heterotrophic/autotrophic biofilm, Water Research, vol.41, issue.20, pp.4657-4671, 2007. ,
DOI : 10.1016/j.watres.2007.06.050
Modeling the development of biofilm density including active bacteria, inert biomass, and extracellular polymeric substances, Water Research, vol.38, issue.14-15, pp.3349-3361, 2004. ,
DOI : 10.1016/j.watres.2004.04.037
Modélisation de la biodégradation des NAPLs dans les eaux souterraines, pp.2014-102 ,
Diversity of the growth patterns of Bacillus subtilis colonies on agar plates, FEMS Microbiology Ecology, vol.12, issue.3, pp.159-168, 1994. ,
DOI : 10.1007/978-1-4684-7609-5_10
Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators., Journal of Bacteriology, vol.176, issue.2, pp.269-275, 1994. ,
DOI : 10.1128/jb.176.2.269-275.1994
Biosurfactant- and Biodegradation-Enhanced Partitioning of Polycyclic Aromatic Hydrocarbons from Nonaqueous-Phase Liquids, Environmental Science & Technology, vol.37, issue.13, pp.2988-2996, 2003. ,
DOI : 10.1021/es020197q
Sloughing and limited substrate conditions trigger filamentous growth in heterotrophic biofilms???Measurements in flow-through tube reactor, Chemical Engineering Science, vol.64, issue.11, pp.2723-2732, 2009. ,
DOI : 10.1016/j.ces.2009.03.009
Mass transfer from nonaqueous phase organic liquids in water-saturated porous media, Water Resources Research, vol.29, issue.1, pp.833-845, 1993. ,
DOI : 10.1016/0169-7722(91)90013-Q
Biofilms in porous media: Development of macroscopic transport equations via volume averaging with closure for local mass equilibrium conditions, Advances in Water Resources, vol.32, issue.3, pp.463-485, 2009. ,
DOI : 10.1016/j.advwatres.2008.11.012
On the ability of a Darcy-scale model to capture wormhole formation during the dissolution of a porous medium, Journal of Fluid Mechanics, vol.457, issue.88, pp.213-254, 2002. ,
DOI : 10.1017/S0022112002007735
A bunch of tiny individuals???Individual-based modeling for microbes, Ecological Modelling, vol.220, issue.1, pp.8-22, 2009. ,
DOI : 10.1016/j.ecolmodel.2008.09.004
Studies of freshwater bacteria. A direct microscopic technique, Journal of Bacteriology, vol.25, pp.277-287, 1933. ,
A model of two-dimensional biofilm morphology, Water Science and Technology, vol.37, pp.219-222, 1998. ,
A simple 2D biofilm model yields a variety of morphological features, Mathematical Biosciences, vol.169, issue.1, pp.1-14, 2001. ,
DOI : 10.1016/S0025-5564(00)00049-3
Relation between food concentration and surface for bacterial growth, Journal of Bacteriology, vol.40, pp.547-558, 1940. ,
Growth and decay in an auto-/heterotrophic biofilm, Water Research, vol.31, issue.9, pp.2243-2252, 1997. ,
DOI : 10.1016/S0043-1354(97)00081-X
Simulation of growth and detachment in biofilm systems under defined hydrodynamic conditions, Biotechnology and Bioengineering, vol.28, issue.5, pp.607-617, 2003. ,
DOI : 10.1016/0043-1354(94)90042-6
Applying a resting operation to alleviate bioclogging in vertical flow constructed wetlands: An experimental lab evaluation, Journal of Environmental Management, vol.136, pp.47-53 ,
DOI : 10.1016/j.jenvman.2014.01.030
Efficiency of active barriers attaching biofilm as sediment capping to eliminate the internal nitrogen in eutrophic lake and canal, Journal of Environmental Sciences, vol.23, issue.5, pp.738-743 ,
DOI : 10.1016/S1001-0742(10)60469-X
Hypothesis for the Role of Nutrient Starvation in Biofilm Detachment, Applied and Environmental Microbiology, vol.70, issue.12, pp.7418-7425, 2004. ,
DOI : 10.1128/AEM.70.12.7418-7425.2004
An experimental study of complete dissolution of a nonaqueous phase liquid in saturated porous media, Water Resources Research, vol.5, issue.1, pp.307-320, 1994. ,
DOI : 10.1021/i160017a002
Modeling Growth and Quorum Sensing in Biofilms Grown in Microfluidic Chambers, Annals of Biomedical Engineering, vol.64, issue.6, pp.1206-1216, 2009. ,
DOI : 10.1007/s00285-002-0190-6
Visualization and simulation of non-aqueous phase liquids solubilization in pore networks, Journal of Contaminant Hydrology, vol.35, issue.4, pp.363-387, 1999. ,
DOI : 10.1016/S0169-7722(98)00102-8
Electron microscopic study of a slime layer, Journal of Bacteriology, vol.99, pp.316-325, 1969. ,
A review of biofilms and their role in microbial contamination of dental unit water systems (DUWS), International Biodeterioration & Biodegradation, vol.54, issue.2-3, pp.87-98, 2004. ,
DOI : 10.1016/j.ibiod.2004.03.012
Adsorption, attachment and biofilm formation among isolates of Listeria monocytogenes using model conditions, Journal of Applied Microbiology, vol.61, issue.4, pp.725-734, 2001. ,
DOI : 10.4315/0362-028X-61.8.948
Modeling multicomponent organic chemical transport in three-fluid-phase porous media, Journal of Contaminant Hydrology, vol.5, issue.4, pp.349-374, 1990. ,
DOI : 10.1016/0169-7722(90)90025-C
Hierarchical simulator of biofilm growth and dynamics in granular porous materials, Advances in Water Resources, vol.30, issue.6-7, pp.1648-1667, 2007. ,
DOI : 10.1016/j.advwatres.2006.05.030
Biofilm Growth and Detachment of Actinobacillus actinomycetemcomitans, Journal of Bacteriology, vol.185, issue.4, pp.1399-1404, 2003. ,
DOI : 10.1128/JB.185.4.1399-1404.2003
Enzymatic Detachment of Staphylococcus epidermidis Biofilms, Antimicrobial Agents and Chemotherapy, vol.48, issue.7, pp.2633-2636, 2004. ,
DOI : 10.1128/AAC.48.7.2633-2636.2004
Concise review of mechanisms of bacterial adhesion to biomaterials and of techniques used in estimating bacteria-material interactions, European Cells and Materials, vol.8, pp.37-57, 2004. ,
DOI : 10.22203/eCM.v008a05
A pore-scale investigation of mass transport from dissolving DNAPL droplets, Journal of Contaminant Hydrology, vol.24, issue.3-4, pp.221-246, 1997. ,
DOI : 10.1016/S0169-7722(96)00011-3
REMEDIATION OF NAPL-CONTAMINATED AQUIFERS: IS THE CURE WORTH THE COST?, Journal of Environmental Science and Health, Part A, vol.31, issue.4, pp.1559-1569, 2001. ,
DOI : 10.1081/ESE-100105731
A degenerate diffusionreaction model of an amensalistic biofilm control system : existence and simulation of solutions. Discrete and Continuous Dynamical Systems, Ser. B, vol.12, pp.371-388, 2009. ,
Comparison of continuum and pore-scale models of nutrient biodegradation under transverse mixing conditions, Advances in Water Resources, vol.30, issue.6-7, pp.1421-1431, 2007. ,
DOI : 10.1016/j.advwatres.2006.05.012
Pore-scale simulation of biomass growth along the transverse mixing zone of a model twodimensional porous medium, Water Resources Research, vol.41, issue.7, p.7007, 2005. ,
An evaluation of Sherwood???Gilland models for NAPL dissolution and their relationship to soil properties, Journal of Contaminant Hydrology, vol.155, pp.87-98 ,
DOI : 10.1016/j.jconhyd.2013.09.007
Impact of biofilm-induced heterogeneities on solute transport in porous media, Water Resources Research, vol.68, issue.7, pp.9103-9119 ,
DOI : 10.1128/AEM.68.7.3597-3605.2002
URL : https://hal.archives-ouvertes.fr/hal-01301700
BacSim, a simulator for individual-based modelling of bacterial colony growth, Microbiology, vol.144, issue.12, pp.3275-3287, 1998. ,
DOI : 10.1099/00221287-144-12-3275
Individual-based modelling of biofilms, Microbiology, vol.28, issue.11, pp.2897-2912, 2001. ,
DOI : 10.1016/0043-1354(94)90043-4
Effect of EPS on biofilm structure and function as revealed by an individual-based model of biofilm growth, Water Science and Technology, vol.43, pp.135-141, 2001. ,
Individual-based modelling of biofilms, Microbiology, vol.28, issue.11, pp.2897-2912, 2001. ,
DOI : 10.1016/0043-1354(94)90043-4
Biodegradation kinetics of phenol and catechol using Pseudomonas putida MTCC 1194, Biochemical Engineering Journal, vol.22, issue.2, pp.151-159, 2005. ,
DOI : 10.1016/j.bej.2004.09.006
Cellular-automata and individual-based approaches for the modeling of biofilm structures: Pros and cons, Desalination, vol.250, issue.1, pp.390-394, 2010. ,
DOI : 10.1016/j.desal.2009.09.062
A 2D Cellular Automaton Biofilm Detachment Algorithm, pp.415-424, 2012. ,
DOI : 10.1007/978-3-642-33350-7_43
Finite element modeling to expand the UMCCA model to describe biofilm mechanical behavior, Water Science and Technology, vol.52, pp.161-166, 2005. ,
Remediation of groundwater contaminated with DNAPLs by biodegradable oil emulsion, Journal of Hazardous Materials, vol.140, issue.1-2, pp.340-345, 2007. ,
DOI : 10.1016/j.jhazmat.2006.09.036
Invasion Percolation in an Etched Network: Measurement of a Fractal Dimension, Physical Review Letters, vol.27, issue.20, pp.2226-2229, 1985. ,
DOI : 10.1103/PhysRevB.27.5686
Turning Bacteria Suspensions into Superfluids, Physical Review Letters, vol.92, issue.2, pp.2015-2021 ,
DOI : 10.1073/pnas.0910426107
Mechanisms of biofilm resistance to antimicrobial agents, Trends in Microbiology, vol.9, issue.1, pp.39-41, 2001. ,
DOI : 10.1016/S0966-842X(00)01913-2
Microbial community structure in autotrophic nitrifying granules characterized by experimental and simulation analyses, Environmental Microbiology, vol.41, issue.1, pp.192-206 ,
DOI : 10.1016/S0723-2020(00)80051-X
Experimental and simulation analysis of community structure of nitrifying bacteria in a membrane-aerated biofilm, Water Science & Technology, vol.55, issue.8-9, pp.283-290, 2007. ,
DOI : 10.2166/wst.2007.269
Differentiation and product formation in molds, Biotechnology and Bioengineering, vol.9, issue.5, pp.771-801, 1970. ,
DOI : 10.1111/j.1365-2672.1960.tb00181.x
A review of immiscible fluids in the subsurface: Properties, models, characterization and remediation, Journal of Contaminant Hydrology, vol.6, issue.2, pp.107-163, 1990. ,
DOI : 10.1016/0169-7722(90)90043-G
Approaches to prevention, removal and killing of biofilms, International Biodeterioration & Biodegradation, vol.51, issue.4, pp.249-253, 2003. ,
DOI : 10.1016/S0964-8305(03)00047-7
Optical method for longterm and large-scale monitoring of spatial biofilm development, pp.773-782, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00284113
Multiphase flow and transport modeling in heterogeneous porous media: challenges and approaches, Advances in Water Resources, vol.21, issue.2, pp.77-120, 1998. ,
DOI : 10.1016/S0309-1708(96)00036-X
Dissolution of Trapped Nonaqueous Phase Liquids: Mass Transfer Characteristics, Water Resources Research, vol.7, issue.3/4, pp.2783-2796, 1990. ,
DOI : 10.1016/0045-7825(84)90046-X
Influence of detachment mechanisms on competition in biofilms, Water Research, vol.34, issue.2, pp.417-426, 2000. ,
DOI : 10.1016/S0043-1354(99)00157-8
Bioremediation and Phytoremediation of Industrial PAH-Polluted Soils, Polycyclic Aromatic Compounds, vol.22, issue.5, pp.1011-1043, 2002. ,
DOI : 10.1080/10406630214286
URL : https://hal.archives-ouvertes.fr/hal-01600280
Mass transfer correlations for nonaqueous phase liquid dissolution from regions with high initial saturations, Water Resources Research, vol.41, issue.2, pp.1030-97, 2003. ,
DOI : 10.1016/S0169-7722(99)00064-9
Bacterial biofilms: Influence on the pathogenesis, diagnosis and treatment of urinary tract infections, Journal of Antimicrobial Chemotherapy, vol.33, issue.suppl A, pp.31-41, 1994. ,
DOI : 10.1093/jac/33.suppl_A.31
Results from the multi-species benchmark problem (bm3) using two-dimensional models, Water Science and Technology, vol.49, pp.169-176, 2004. ,
Simulation of multispecies biofilm development in three dimensions, Water Science and Technology, vol.39, issue.7, pp.123-130, 1999. ,
Bacterial adhesion to cells and tissues, 1994. ,
DOI : 10.1007/978-1-4684-6435-1
Modeling field-scale dense non-aqueous phase liquid dissolution kinetics in heterogeneous aquifers, Water Resources Research, vol.40, p.5109, 2004. ,
Sociomicrobiology: the connections between quorum sensing and biofilms, Trends in Microbiology, vol.13, issue.1, pp.27-33, 2005. ,
DOI : 10.1016/j.tim.2004.11.007
Effect of shear stress and growth conditions on detachment and physical properties of biofilms, Water Research, vol.46, issue.17, pp.5499-5508, 2012. ,
DOI : 10.1016/j.watres.2012.07.029
URL : https://hal.archives-ouvertes.fr/hal-00914515
Visualisation of bacterial degradation and mobilisation of oil in a porous medium, Environmental Geology, vol.38, issue.3, pp.204-208, 1989. ,
DOI : 10.1007/s002540050416
Multidimensional modelling of anaerobic granules, Water Science and Technology, vol.52, pp.501-507, 2005. ,
Particle-Based Multidimensional Multispecies Biofilm Model, Applied and Environmental Microbiology, vol.70, issue.5, pp.3024-3040, 2004. ,
DOI : 10.1128/AEM.70.5.3024-3040.2004
Modeling and predicting biofilm structure, p.2000 ,
Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach, Biotechnology and Bioengineering, vol.22, issue.1, pp.101-102, 1998. ,
DOI : 10.1111/j.1574-6941.1997.tb00351.x
Effect of diffusive and convective substrate transport on biofilm structure formation: A two-dimensional modeling study, Biotechnology and Bioengineering, vol.22, issue.5, pp.504-515, 2000. ,
DOI : 10.1111/j.1574-6941.1997.tb00351.x
Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach, Biotechnology and Bioengineering, vol.22, issue.1, pp.101-106, 1998. ,
DOI : 10.1111/j.1574-6941.1997.tb00351.x
A new combined differential-discrete cellular automaton approach for biofilm modeling: Application for growth in gel beads, Biotechnology and Bioengineering, vol.38, issue.6, pp.718-731, 1998. ,
DOI : 10.1515/REVCE.1996.12.1-2.1
A theoretical study on the effect of surface roughness on mass transport and transformation in biofilms, Biotechnology and Bioengineering, vol.49, issue.4, pp.355-369, 2000. ,
DOI : 10.1002/(SICI)1097-0290(19960120)49:2<172::AID-BIT6>3.0.CO;2-N
Two-dimensional model of biofilm detachment caused by internal stress from liquid flow, Biotechnology & Bioengineering, vol.22, issue.2, pp.205-2018, 2001. ,
DOI : 10.1002/1097-0290(20000120)72:2<205::AID-BIT9>3.0.CO;2-L
Advances in mathematical modeling of biofilm structure, Biofilms, vol.1, issue.4, pp.1-13, 2004. ,
DOI : 10.1017/S1479050505001572
Towards optimum permeability reduction in porous media using biofilm growth simulations, Biotechnology and Bioengineering, vol.186, issue.2, pp.767-779, 2009. ,
DOI : 10.1007/b98879
The effect of biofilm permeability on bio-clogging of porous media, Biotechnology and Bioengineering, vol.56, issue.4, pp.1031-1042 ,
DOI : 10.1016/S0009-2509(00)00398-5
Prevention of bacterial growth in drinking water distribution systems Health-Related Water Microbiology, Selected Proceedings of the {IAWQ} 8th International Symposium on Healthrelated Water Microbiology, pp.11-12283, 1996. ,
Quantitative Cellular Automaton Model for Biofilms, Journal of Environmental Engineering, vol.127, issue.9, pp.782-789, 2001. ,
DOI : 10.1061/(ASCE)0733-9372(2001)127:9(782)
MICROBIOLOGY:Forging a Link Between Biofilms and Disease, Science, vol.283, issue.5409, pp.1837-1839, 1999. ,
DOI : 10.1126/science.283.5409.1837
Phenomenological models for transient NAPL-water mass-transfer processes, Journal of Contaminant Hydrology, vol.16, issue.1, pp.1-33, 1994. ,
DOI : 10.1016/0169-7722(94)90070-1
An experimental investigation of nonaqueous phase liquid dissolution in saturated subsurface systems: Steady state mass transfer rates, Water Resources Research, vol.5, issue.2, pp.2691-2705, 1992. ,
DOI : 10.1021/i160017a002
An experimental investigation of nonaqueous phase liquid dissolution in saturated subsurface systems: Transient mass transfer rates, Water Resources Research, vol.1, issue.16, pp.321-332, 1994. ,
DOI : 10.1002/aic.690010222
Theoretical study of the significance of nonequilibrium dissolution of nonaqueous phase liquids in subsurface systems, Water Resources Research, vol.5, issue.1, pp.463-477, 1991. ,
DOI : 10.1021/i160017a002
Biofilms : A survival strategy of bacteria, Journal of Current Research in Science, vol.85, pp.9-10, 2003. ,
Twodimension mathematical modeling of photosynthetic bacterial biofilm growth and formation, International Journal of Hydrogen Energy, vol.37, pp.15607-15615 ,
Changes in microbiological metabolism under chemical stress, Chemosphere, vol.71, issue.3, pp.474-483, 2008. ,
DOI : 10.1016/j.chemosphere.2007.10.026
Aquasim -a tool for simulation and data-analysis of aquatic systems, Water Science and Technology, vol.30, pp.21-30, 1994. ,
Hydraulic displacement of dense nonaqueous phase liquids for source zone stabilization, Ground Water, vol.50, pp.765-774 ,
Visualization and modeling of the colonization dynamics of a bioluminescent bacterium in variably saturated, translucent quartz sand, Advances in Water Resources, vol.30, issue.6-7, pp.6-71593, 2007. ,
DOI : 10.1016/j.advwatres.2006.05.026
Viscoelasticity of Staphylococcus aureus Biofilms in Response to Fluid Shear Allows Resistance to Detachment and Facilitates Rolling Migration, Applied and Environmental Microbiology, vol.71, issue.4, pp.2175-2178, 2005. ,
DOI : 10.1128/AEM.71.4.2175-2178.2005
Effect of groundwater flow dimensionality on mass transfer from entrapped nonaqueous phase liquid contaminants, Water Resources Research, vol.61, issue.2, pp.971-979, 2000. ,
DOI : 10.2136/sssaj1997.03615995006100020002x
Upscaling of mass transfer rate coefficient for the numerical simulation of dense nonaqueous phase liquid dissolution in heterogeneous aquifers, Water Resources Research, vol.53, issue.1-2, p.2428, 2007. ,
DOI : 10.1016/S0169-7722(02)00074-8
Growth kinetics of an indigenous mixed microbial consortium during phenol degradation in a batch reactor, Bioresource Technology, vol.99, issue.1, pp.205-209, 2008. ,
DOI : 10.1016/j.biortech.2006.11.045
Pseudomonas aeruginosa Displays Multiple Phenotypes during Development as a Biofilm, Journal of Bacteriology, vol.184, issue.4, pp.1140-1154, 2002. ,
DOI : 10.1128/jb.184.4.1140-1154.2002
Effects of Substratum Topography on Bacterial Adhesion, Journal of Colloid and Interface Science, vol.208, issue.1, pp.23-33, 1998. ,
DOI : 10.1006/jcis.1998.5717
Fractal geometry and growth models of a Bacillus subtilis colony. Binary, computing in microbiology, pp.66-72, 1992. ,
A model of intrinsic growth of a bacillus colony, Binary, computing in microbiology, vol.6, pp.105-108, 1994. ,
Dense chlorinated solvents in porous and fractured media -model experiments. Chelsea ; Lewis, 1988. ,
A critical evaluation of the local-equilibrium assumption in modeling NAPL-pool dissolution, Journal of Contaminant Hydrology, vol.39, issue.1-2, pp.109-135, 1999. ,
DOI : 10.1016/S0169-7722(99)00026-1
The application of a mulch biofilm barrier for surfactant enhanced polycyclic aromatic hydrocarbon bioremediation, Environmental Pollution, vol.157, issue.1, pp.95-101, 2009. ,
DOI : 10.1016/j.envpol.2008.07.022
F1, Environmental Toxicology and Chemistry, vol.2, issue.1, pp.56-63, 2010. ,
DOI : 10.1007/978-1-4615-8222-9_3
URL : https://hal.archives-ouvertes.fr/in2p3-00952104
Biofilms: implications in bioremediation, Trends in Microbiology, vol.14, issue.9, pp.389-397, 2006. ,
DOI : 10.1016/j.tim.2006.07.001
Effect of biofilm growth on steady-state biofilm models, Biotechnology and Bioengineering, vol.3, issue.5, pp.502-510, 1990. ,
DOI : 10.1002/bit.260350508
Biofilms and antibiotic therapy: Is there a role for combating bacterial resistance by the use of novel drug delivery systems?, Advanced Drug Delivery Reviews, vol.57, issue.10, pp.1539-1550, 2005. ,
DOI : 10.1016/j.addr.2005.04.007
Biofilm formation and persistence, 2000. ,
Biofilm material properties as related to shear-induced deformation and detachment phenomena, Journal of Industrial Microbiology and Biotechnology, vol.29, issue.6, pp.361-367, 2002. ,
DOI : 10.1038/sj.jim.7000282
Growth and Detachment of Cell Clusters from Mature Mixed-Species Biofilms, Applied and Environmental Microbiology, vol.67, issue.12, pp.5608-5613, 2001. ,
DOI : 10.1128/AEM.67.12.5608-5613.2001
Quantification of detachment forces on rigid biofilm colonies in a roto-torque reactor using computational fluid dynamics tools, Water Science & Technology, vol.52, pp.149-154, 2005. ,
Assessment of the two relaxation time Lattice-Boltzmann scheme to simulate Stokes flow in porous media, Water Resources Research, vol.75, issue.5, pp.4526-2012 ,
DOI : 10.1190/1.3463704
An improved cellular automaton method to model multispecies biofilms, Water Research, vol.47, issue.15, pp.5729-5742, 2013. ,
DOI : 10.1016/j.watres.2013.06.055
Influence of growth history on sloughing and erosion from biofilms, Water Research, vol.38, issue.17, pp.3671-3684, 2004. ,
DOI : 10.1016/j.watres.2004.05.020
Interaction between water flow and spatial distribution of microbial growth in a two-dimensional flow field in saturated porous media, Journal of Contaminant Hydrology, vol.58, issue.3-4, pp.3-4169, 2002. ,
DOI : 10.1016/S0169-7722(02)00033-5
Dynamics of biofilm detachment in biofilm airlift suspension reactors, Biotechnology and Bioengineering, vol.28, issue.6, pp.481-487, 1995. ,
DOI : 10.1002/bit.260450604
Mathematical modelling of biofilm structures, Antonie van Leeuwenhoek, vol.81, issue.1/4, pp.245-256, 2002. ,
DOI : 10.1023/A:1020527020464
Interfacial Lifshitz-van der Waals and polar interactions in macroscopic systems, Chemical Reviews, vol.88, issue.6, pp.927-941, 1988. ,
DOI : 10.1021/cr00088a006
Nickel and cadmium ions inhibit quorum sensing and biofilm formation without affecting viability in Burkholderia multivorans, International Biodeterioration & Biodegradation, vol.91, issue.0, pp.9182-87 ,
DOI : 10.1016/j.ibiod.2014.03.013
Three-dimensional simulations of biofilm growth in porous media, AIChE Journal, vol.93, issue.4, pp.494-504, 2009. ,
DOI : 10.1099/00221287-147-11-2897
Detachment characteristics of a mixed culture biofilm using particle size analysis, Chemical Engineering Journal, vol.228, issue.0, pp.1140-1147 ,
DOI : 10.1016/j.cej.2013.05.071
Review of mathematical models for biofilms, Solid State Communications, vol.150, issue.21-22, pp.21-221009, 2010. ,
DOI : 10.1016/j.ssc.2010.01.021
A multispecies biofilm model, Biotechnology and Bioengineering, vol.10, issue.3, pp.314-328, 1986. ,
DOI : 10.1002/bit.260280304
The Method of Volume Averaging, 1999. ,
DOI : 10.1007/978-94-017-3389-2
A unifying hypothesis for the structure of microbial biofilms based on cellular automaton models, FEMS Microbiology Ecology, vol.5, issue.1, pp.1-16, 1997. ,
DOI : 10.1007/978-1-4684-7609-5_10
What are bacterial extracellular polymeric substances ? Dans Jost Wingender, ThomasR. Neu, et Hans-Curt Flemming, éditeurs, Microbial Extracellular Polymeric Substances, pp.1-19, 1999. ,
Effective reaction at a fluid???solid interface: Applications to biotransformation in porous media, Advances in Water Resources, vol.30, issue.6-7, pp.1630-1647, 2007. ,
DOI : 10.1016/j.advwatres.2006.05.032
Diffusion and reaction in biofilms, Chemical Engineering Science, vol.53, issue.3, pp.397-425, 1998. ,
DOI : 10.1016/S0009-2509(97)00319-9
Multi-Scale Individual-Based Model of Microbial and Bioconversion Dynamics in Aerobic Granular Sludge, Environmental Science & Technology, vol.41, issue.18, pp.6410-6417, 2007. ,
DOI : 10.1021/es070264m
Biofilm-control strategies based on enzymic disruption of the extracellular polymeric substance matrix - a modelling study, Microbiology, vol.151, issue.12, pp.3817-3832, 2005. ,
DOI : 10.1099/mic.0.28165-0
A general description of detachment for multidimensional modelling of biofilms, Biotechnol Bioeng, vol.91, pp.651-669, 2005. ,
Biological control of microbial attachment: a promising alternative for mitigating membrane biofouling, Applied Microbiology and Biotechnology, vol.160, issue.3, pp.825-837 ,
DOI : 10.1371/journal.pcbi.0010055
Numerical simulation of biofilm growth in flow channels using a cellular automaton approach coupled with a macro flow computation, Biorheology, vol.50, pp.203-216 ,