Phenolic content as an indicator of tolerance of cowpea seedlings to Sclerotium rolfsii, European Journal of Plant Pathology, vol.149, pp.245-251, 2017. ,
Plant Pathology, 2005. ,
Physiology of fungi, 1978. ,
Are plant diseases too much ignored in the climate change debate ?, European Journal of Plant Pathology, vol.133, pp.291-294, 2012. ,
Phenolic predictors for Norway spruce resistance to the bark beetle Ips typographus (Coleoptera: Scolytidae) and an associated fungus, Ceratocystis polonica, Canadian Journal of Forest Research, vol.28, pp.720-728, 1998. ,
Influence de ?âge des feuilles de peuplier sur la sensibilité à Marssonina brunnea, European Journal of Forest Pathology, vol.8, pp.273-279, 1978. ,
Physiologic specialization of Puccinia hordei on barley hosts with non-hypersensitive resistance, Transactions of the British Mycological Society, vol.63, pp.421-430, 1974. ,
Physiology of Fungi, 1959. ,
Leaf development and leaf stress: increased susceptibility associated with sink-source transition, Tree Physiology, vol.2, pp.289-299, 1986. ,
The effect of ozone on cottonwood -leaf rust interactions: independence of abiotic stress, genotype, and leaf ontogeny, Canadian Journal of Botany, vol.65, pp.949-953, 1987. ,
Partial resistance to Melampsora larici-populina leaf rust in hybrid poplars: genetic variability in inoculated excised leaf disk bioassay and relationship with complete resistance, Phytopathology, vol.93, pp.421-427, 2003. ,
Obligate biotrophy features unraveled by the genomic analysis of rust fungi, Proceedings of the National Academy of Sciences, vol.108, pp.9166-9171, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01000169
Genetic structure of the poplar rust fungus Melampsora larici-populina: Evidence for isolation by distance in Europe and recent founder effects overseas, Infection, Genetics and Evolution, vol.8, pp.577-587, 2008. ,
, , 2018.
Genetic variation of morphological characters within a single isolate of the endomycorrhizal fungus Glomus clarum (Glomaceae), American Journal of Botany, vol.84, pp.1211-1216, 1997. ,
Heritable variation and mechanisms of inheritance of spore shape within a population of Scutellospora pellucida, an arbuscular mycorrhizal fungus, American journal of botany, vol.86, pp.1209-1216, 1999. ,
Plant-parasite coevolution: bridging the gap between genetics and ecology, Annual Review of Phytopathology, vol.49, pp.345-367, 2011. ,
Environmental quality and evolutionary potential: lessons from wild populations, Proceedings of the Royal Society B: Biological Sciences, vol.272, pp.1415-1425, 2005. ,
Physiologic specialization of Puccinia hordei on barley hosts with non-hypersensitive resistance, Transactions of the British Mycological Society, vol.63, pp.421-430, 1974. ,
Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice, Genetics, vol.170, pp.613-630, 2005. ,
Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew, Evolutionary Applications, vol.9, pp.709-725, 2016. ,
Potential of Eurasian poplar rust to overcome a major quantitative resistance factor, Plant Pathology, vol.59, pp.523-534, 2010. ,
, , 2018.
Current status of the gene-for-gene concept, Annual Review of Phytopathology, vol.9, pp.275-296, 1971. ,
,
Adaptation of Phytophthora infestans to partial resistance in potato: Evidence from French and Moroccan populations, Phytopathology, vol.97, pp.338-343, 2007. ,
Genome-Wide Association Studies in plant pathosystems: toward an ecological genomics approach, Frontiers in Plant Science, vol.8, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606059
Erosion of quantitative host resistance in the apple×Venturia inaequalis pathosystem, Infection, Genetics and Evolution, vol.27, pp.481-489, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01210000
Breakdown of Pl2, a major gene of resistance to apple powdery mildew, in a French experimental orchard, Plant Pathology, vol.54, pp.116-124, 2005. ,
A Genome-Wide Association Study identifies genomic regions for virulence in the nonmodel organism Heterobasidion annosum s.s (Y-H Lee, PLoS ONE, vol.8, p.53525, 2013. ,
Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew, Evolutionary Applications, vol.9, pp.709-725, 2016. ,
Potential of Eurasian poplar rust to overcome a major quantitative resistance factor, Plant Pathology, vol.59, pp.523-534, 2010. ,
Durable strategies to deploy plant resistance in agricultural landscapes, New Phytologist, vol.193, pp.1064-1075, 2012. ,
DOI : 10.1111/j.1469-8137.2011.04019.x
URL : https://hal.archives-ouvertes.fr/hal-01000305
Current status of the gene-for-gene concept, Annual Review of Phytopathology, vol.9, pp.275-296, 1971. ,
Evolution of parasite virulence against qualitative or quantitative host resistance, Proceedings of the Royal Society of London B: Biological Sciences, vol.267, pp.985-990, 2000. ,
DOI : 10.1098/rspb.2000.1100
URL : http://europepmc.org/articles/pmc1690632?pdf=render
Validation of Genome-Wide Association Studies as a tool to identify virulence factors in Parastagonospora nodorum, Phytopathology, vol.106, pp.1177-1185, 2016. ,
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements, The ISME Journal, vol.11, pp.1189-1204, 2017. ,
DOI : 10.1038/ismej.2016.196
URL : https://www.nature.com/articles/ismej2016196.pdf
Molecular basis of natural variation and environmental control of trichome patterning, Frontiers in Plant Science, vol.5, p.320, 2014. ,
Validating, augmenting and refining genome-wide association signals, Nature Reviews Genetics, vol.10, pp.318-329, 2009. ,
DOI : 10.1038/nrg2544
The concept of durable resistance, Phytopathology, vol.69, 0198. ,
DOI : 10.1094/phyto-69-198
The advantages and limitations of trait analysis with GWAS: a review, Plant Methods, vol.9, p.29, 2013. ,
Variation and selection of quantitative traits in plant pathogens, Annual Review of Phytopathology, vol.50, pp.319-338, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01019819
lsmeans: Least-Squares Means, 2018. ,
How aggressiveness and morphological traits did evolve following a major resistance breakdown in the poplar rust fungus Melampsora laricipopulina? ,
Defense compounds rather than nutrient availability shape aggressiveness trait variation along a leaf maturity gradient in a biotrophic plant pathogen, Frontiers in Plant Science, vol.9, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01901489
Identification of avirulence loci in the poplar rust fungus Melampsora larici-populina using a genome-wide association study ,
The population genetics of plant pathogens and breeding strategies for durable resistance, Euphytica, vol.124, pp.163-180, 2002. ,
Virus adaptation to quantitative plant resistance: erosion or breakdown, Journal of Evolutionary Biology, vol.25, pp.2242-2252, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01208594
Durable resistance: A key to sustainable management of pathogens and pests. Infection, Genetics and Evolution, vol.27, pp.446-455, 2014. ,
Potentially durable resistance mechanisms in plants to specialised fungal pathogens, Euphytica, vol.124, pp.201-216, 2002. ,
Family-based designs for genome-wide association studies, Nature Reviews Genetics, vol.12, pp.465-474, 2011. ,
Genome wide association identifies novel loci involved in fungal communication, PLoS Genetics, vol.9, p.1003669, 2013. ,
Aggressiveness components and adaptation to a host cultivar in wheat leaf rust, Phytopathology, vol.99, pp.869-878, 2009. ,
Étude des traits d'histoire de vie de Melampsora larici-populina, agent de la rouille du peuplier: de leur déterminisme génétique à leurs conséquences évolutives, 2015. ,
Genome-wide patterns of segregation and linkage disequilibrium: the construction of a, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01269013
Rare variant association analysis methods for complex traits, Annual Review of Genetics, vol.44, pp.293-308, 2010. ,
Genetic structure of the poplar rust fungus Melampsora larici-populina: Evidence for isolation by distance in Europe and recent founder effects overseas, Infection, Genetics and Evolution, vol.8, pp.577-587, 2008. ,
Genome-Wide Association Studies in plant pathosystems: toward an ecological genomics approach, Frontiers in Plant Science, vol.8, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606059
Breakdown of Pl2, a major gene of resistance to apple powdery mildew, in a French experimental orchard, Plant Pathology, vol.54, pp.116-124, 2005. ,
Slow erosion of a quantitative apple resistance to Venturia inaequalis based on an isolate-specific Quantitative Trait Locus. Infection, Genetics and Evolution, vol.44, pp.541-548, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01594610
Effector-triggered immunity: from pathogen perception to robust defense, Annual Review of Plant Biology, vol.66, pp.487-511, 2015. ,
A Genome-Wide Association Study identifies genomic regions for virulence in the nonmodel organism Heterobasidion annosum s.s (Y-H Lee, PLoS ONE, vol.8, p.53525, 2013. ,
EggLib: processing, analysis and simulation tools for population genetics and genomics, BMC Genetics, vol.13, p.27, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01268349
Plant immunity: towards an integrated view of plant-pathogen interactions, Nature Reviews Genetics, vol.11, pp.539-548, 2010. ,
Potential of Eurasian poplar rust to overcome a major quantitative resistance factor, Plant Pathology, vol.59, pp.523-534, 2010. ,
Current status of the gene-for-gene concept, Annual Review of Phytopathology, vol.9, pp.275-296, 1971. ,
Validation of Genome-Wide Association Studies as a tool to identify virulence factors in Parastagonospora nodorum, Phytopathology, vol.106, pp.1177-1185, 2016. ,
Comparison of genetic and virulence diversity of Melampsora larici-populina populations on wild and cultivated poplar and influence of the alternate host, Phytopathology, vol.96, pp.1027-1036, 2006. ,
Population genomics of fungal and Oomycete pathogens, Annual Review of Phytopathology, vol.54, 2016. ,
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements, The ISME Journal, vol.11, pp.1189-1204, 2017. ,
The plant immune system, Nature, vol.444, pp.323-329, 2006. ,
Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection, New Phytologist, vol.167, pp.113-127, 2005. ,
The advantages and limitations of trait analysis with GWAS: a review, Plant Methods, vol.9, p.29, 2013. ,
The plastochron index as applied to developmental studies of cottonwood, Canadian Journal of Forest Research, vol.1, pp.1-11, 1971. ,
Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, pp.1754-1760, 2009. ,
The Sequence Alignment/Map format and SAMtools, Genome Project Data Processing Subgroup, vol.25, pp.2078-2079, 1000. ,
Fungal effectors and plant susceptibility, Annual Review of Plant Biology, vol.66, pp.513-545, 2015. ,
Potentially durable resistance mechanisms in plants to specialised fungal pathogens, Euphytica, vol.124, pp.201-216, 2002. ,
Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina, Frontiers in Plant Science, vol.5, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01269013
Demographic and genomic consequences of a major event of adaptation in the pathogenic fungus Melampsora larici-populina ,
The escalatory Red Queen: Population extinction and replacement following arms race dynamics in poplar rust, Molecular Ecology, vol.26, pp.1902-1918, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01564550
Two pathogenic races of Melampsora larici-populina in north-western Europe, European Journal of Forest Pathology, vol.17, pp.47-53, 1987. ,
Interactions between poplar clones and Melampsora populations and their implications for breeding for durable resistance, Rust diseases of willow and poplar, pp.139-154, 2005. ,
Using population and comparative genomics to understand the genetic basis of effectordriven fungal pathogen evolution, Frontiers in Plant Science, vol.8, p.119, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01530810
Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99, Science, vol.358, pp.1604-1606, 2017. ,
Essential plant pathology. Essential plant pathology, 2006. ,
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations, Nature Genetics, vol.44, pp.825-830, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01267792
Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping, Molecular Genetics and Genomics, vol.291, pp.1363-1377, 2016. ,
The origins of plant pathogens in agro-ecosystems, Annual Review of Phytopathology, vol.46, pp.75-100, 2008. ,
Genome-Wide Association Study identifies novel candidate genes for aggressiveness, deoxynivalenol production, and azole sensitivity in natural field populations of Fusarium graminearum, Molecular plant-microbe interactions: MPMI, vol.29, pp.417-430, 2016. ,
Comparative genomics integrated with association analysis identifies candidate effector genes corresponding to Lr20 in phenotype-paired Puccinia triticina isolates from Australia, Frontiers in Plant Science, vol.8, 2017. ,
Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach, Molecular Ecology, vol.21, pp.2383-2398, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01191214
The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication, Molecular Ecology, vol.20, pp.2739-2755, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01136973
Association analysis of SP-SNPs and avirulence genes in Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen, American Journal of Plant Sciences, vol.07, p.126, 2016. ,
Breakdown of Rlm3 resistance in the Brassica napus-Leptosphaeria maculans pathosystem in western Canada, European Journal of Plant Pathology, vol.145, pp.659-674, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01462748
, A References, 2017.
EggLib: processing, analysis and simulation tools for population genetics and genomics, BMC Genetics, vol.13, p.27, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01268349
Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, pp.1754-1760, 2009. ,
The Sequence Alignment/Map format and SAMtools, Genome Project Data Processing Subgroup, vol.25, pp.2078-2079, 1000. ,
Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina, Frontiers in Plant Science, vol.5, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01269013
Demographic and genomic consequences of a major event of adaptation in the pathogenic fungus Melampsora larici-populina ,
, , vol.10, p.5
, , vol.9, p.6
, Pos, vol.13, issue.8, p.50
L'évolution rapide du volume des spores n'en ferait donc pas une bonne cible pour augmenter la durabilité des résistances quantitatives, 1976. ,
En considérant que le mycélium est le tissu d'absorption des nutriments indispensables à la croissance du parasite, l'investissement mis dans le développement de ce tissu devrait conduire à des valeurs égales entre les différentes populations. La quantité de mycélium in planta est d'ailleurs apparue peu variable et pas influencée par la quantité de composés de défenses des feuilles. Ceci est cohérent avec un investissement énergétique principal dans ce tissu mais c'est aussi étonnant car le mycélium est le tissu fongique directement au contact des cellules foliaires. L'héritabilité élevée de ce caractère lui confèrerait la possibilité d'évoluer en présence d'un autre régime de sélection naturelle. En effet, face à une résistance quantitative, les individus au mycélium le plus développé pourraient être favorisés, Ceci confère à ce caractère la possibilité de répondre à la sélection naturelle. Ainsi, il semble avoir été sous sélection stabilisante au moment du contournement de la résistance R7, 2000. ,
, Contrairement au volume des spores et à la quantité de mycélium, les autres caractères d'agressivité ont des valeurs d'héritabilité relativement faibles (l'héritabilité de l'efficacité d'infection étant a priori surestimée), ce qui les empêcherait d'évoluer par adaptation génétique. De façon cohérente, le temps de latence, la taille des lésions et le nombre de spores (donc le taux de sporulation) n'ont pas évolué avec le contournement de la résistance R7
, Il semble tout de même probable que ce caractère ait évolué au moment et après le contournement de la résistance R7. Si la différence de temps de latence entre populations n'est pas apparue significative dans le chapitre 2 (Maupetit et al., in prep.), une légère augmentation a été mesurée entre 1993 (7,23 j) et 1994 (7,57 j), suivie d'une diminution en, L'héritabilité du temps de latence peut avoir été sous-estimée à cause de la faible résolution des mesures comme mentionné plus haut, 1998.
En effet, les études antérieures ont été réalisées sur 'Beaupré' (R7) alors que nous avons ici inoculé les souches sur 'Robusta' comme précisé précédemment. L'ensemble de ces résultats est cohérent avec ceux de l'expérience qui a consisté à inoculer des souches de 1994 et 1998 sur six variétés de peuplier, dont 'Beaupré' et 'Robusta' (Hayden, non publié), La différence de résultats entre ces expériences et celle décrite dans le chapitre 2 peut s'expliquer par la différence entre les variétés de peuplier utilisées pour l'inoculation ,
face à une résistance quantitative ciblant un caractère donné (capacité de sporulation), un autre caractère (taille des lésions) impliqué dans la même fonction pourrait évoluer. L'évolution de ce dernier pourrait alors compenser la perte d'agressivité due à la résistance et restaurer l'agressivité du parasite. D'autres moyens de lutte contre M. larici-populina sont donc à envisager en populiculture. Si les mélanges variétaux se sont révélés efficaces contre certains parasites, Cependant, la durabilité des résistances quantitatives est aussi mise à mal par l'érosion et les contournements. Un autre cas de figure a été étudié par Van Den, 1999. ,
, une base indispensable aux prochaines études. Il sera néanmoins impératif de connaître plus précisément l'évolution des caractères quantitatifs et qualitatifs de M. larici-populina autour d'autres contournements de résistances, 2011.
Une première étape peut consister en la comparaison de séquences puis de protéines d'organismes proches afin de déterminer les potentielles retombées d'une modification dans le gène ciblé. Des validations fonctionnelles pourront être envisagées par la suite comme fait par, La localisation du locus d'avirulence Avr7 constitue une piste majeure pour de futures analyses, 2013. ,
Phenolic content as an indicator of tolerance of cowpea seedlings to Sclerotium rolfsii, European Journal of Plant Pathology, vol.149, pp.245-251, 2017. ,
Nomenclature for pathogenicity and virulence: precision vs. tradition, Phytopathology, pp.518-519, 1995. ,
DOI : 10.1094/phyto-85-518
Adaptation of Phytophthora infestans to partial resistance in potato: Evidence from French and Moroccan populations, Phytopathology, vol.97, pp.338-343, 2007. ,
Components of quantitative resistance to leaf rust in wheat cultivars: diversity, variability and specificity, Plant Pathology, vol.62, pp.970-981, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01003394
Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar, New Phytologist, vol.192, pp.151-163, 2011. ,
Erosion of quantitative host resistance in the apple×Venturia inaequalis pathosystem. Infection, Genetics and Evolution, vol.27, pp.481-489, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01210000
Breakdown of Pl2, a major gene of resistance to apple powdery mildew, in a French experimental orchard, Plant Pathology, vol.54, pp.116-124, 2005. ,
Influence de ?âge des feuilles de peuplier sur la sensibilité à Marssonina brunnea, European Journal of Forest Pathology, vol.8, pp.273-279, 1978. ,
DOI : 10.1111/j.1439-0329.1978.tb00639.x
Environmental quality and evolutionary potential: lessons from wild populations, Proceedings of the Royal Society B: Biological Sciences, vol.272, pp.1415-1425, 2005. ,
DOI : 10.1098/rspb.2005.3117
URL : http://europepmc.org/articles/pmc1559820?pdf=render
Physiologic specialization of Puccinia hordei on barley hosts with non-hypersensitive resistance, Transactions of the British Mycological Society, vol.63, pp.421-430, 1974. ,
DOI : 10.1016/s0007-1536(74)80088-4
Leaf development and leaf stress: increased susceptibility associated with sink-source transition, Tree Physiology, vol.2, pp.289-299, 1986. ,
DOI : 10.1093/treephys/2.1-2-3.289
Effector-triggered immunity: from pathogen perception to robust defense, Annual Review of Plant Biology, vol.66, pp.487-511, 2015. ,
Mise au point d'un automate et d'une méthode d'analyse d'images pour le suivi de cinétiques d'infection par la rouille du peuplier, 2018. ,
Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen, PLOS Pathogens, vol.8, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01019027
Host-parasite 'Red Queen' dynamics archived in pond sediment, Nature, vol.450, pp.870-873, 2007. ,
Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew, Evolutionary Applications, vol.9, pp.709-725, 2016. ,
Rapid and multiregional adaptation to host partial resistance in a plant pathogenic oomycete: Evidence from European populations of Plasmopara viticola, the causal agent of grapevine downy mildew, Infection, Genetics and Evolution, vol.27, pp.500-508, 2014. ,
Plant immunity: towards an integrated view of plant-pathogen interactions, Nature Reviews Genetics, vol.11, pp.539-548, 2010. ,
Partial resistance to Melampsora larici-populina leaf rust in hybrid poplars: genetic variability in inoculated excised leaf disk bioassay and relationship with complete resistance, Phytopathology, vol.93, pp.421-427, 2003. ,
Potential of Eurasian poplar rust to overcome a major quantitative resistance factor, Plant Pathology, vol.59, pp.523-534, 2010. ,
Current status of the gene-for-gene concept, Annual Review of Phytopathology, vol.9, pp.275-296, 1971. ,
Using the resurrection approach to understand contemporary evolution in changing environments, Evolutionary Applications, vol.11, pp.17-28, 2018. ,
Variability and population biology of Melampsora rusts on poplars, Rust diseases of willow and poplar, pp.63-72, 2005. ,
Evolution of parasite virulence against qualitative or quantitative host resistance, Proceedings of the Royal Society of London B: Biological Sciences, vol.267, pp.985-990, 2000. ,
Influence of clonal susceptibility, leaf age and inoculum density on infections by Melampsora larici-populina races E1 and E3, European Journal of Forest Pathology, vol.26, pp.323-331, 1996. ,
Le plan Ecophyto de réduction d'usage des pesticides en France : décryptage d'un échec et raisons d'espérer, Cahiers Agricultures, vol.26, p.14002, 2017. ,
The poplar-poplar rust interaction: insights from genomics and transcriptomics, Journal of Pathogens, pp.1-11, 2011. ,
The Rust Fungi, pp.267-306, 2000. ,
Increased aggressiveness of Alternaria macrospora, a causal agent of leaf blight in cotton monoculture, Canadian Journal of Botany, vol.70, pp.1878-1884, 1992. ,
Validating, augmenting and refining genome-wide association signals, Nature Reviews Genetics, vol.10, pp.318-329, 2009. ,
The concept of durable resistance, Phytopathology, vol.69, 0198. ,
The plant immune system, Nature, vol.444, pp.323-329, 2006. ,
Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection, New Phytologist, vol.167, pp.113-127, 2005. ,
Density-dependent fitness interactions in the bean rust fungus, Phytopathology, vol.79, pp.409-412, 1989. ,
Measurement of infection efficiency of a major wheat pathogen using time-resolved imaging of disease progress, p.318204, 2018. ,
Genetic selection and adaptation of Cochliobolus heterostrophus to corn hosts with partial resistance, Phytopathology, vol.76, pp.774-777, 1986. ,
The advantages and limitations of trait analysis with GWAS: a review, Plant Methods, vol.9, p.29, 2013. ,
Plant innate immune response: qualitative and quantitative resistance, Critical Reviews in Plant Sciences, vol.35, pp.38-55, 2016. ,
DOI : 10.1080/07352689.2016.1148980
Epidemiological and evolutionary consequences of life-history trade-offs in pathogens, Plant Pathology, vol.62, pp.96-105, 2013. ,
Efficiency of pyramiding of three quantitative resistance loci to apple scab, Plant Pathology, vol.66, pp.412-422, 2017. ,
Variation and selection of quantitative traits in plant pathogens, Annual Review of Phytopathology, vol.50, pp.319-338, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01019819
Heritability of latent period estimated from wild-type and selected populations of Puccinia triticina, Phytopathology, vol.97, pp.1022-1029, 2007. ,
Selection in heterogeneous populations of Puccinia graminis f. sp. avenae, Phytopathology, vol.59, pp.1851-1857, 1969. ,
Fungal effectors and plant susceptibility, Annual Review of Plant Biology, vol.66, pp.513-545, 2015. ,
Intra-sire correlations or regressions of offspring on dam as a method of estimating heritability of characteristics, Journal of Animal Science, pp.293-301, 1940. ,
The genetics of quantitative traits: challenges and prospects, Nature Reviews Genetics, vol.10, pp.565-577, 2009. ,
How aggressiveness and morphological traits did evolve following a major resistance breakdown in the poplar rust fungus Melampsora larici-populina? ,
Defense compounds rather than nutrient availability shape aggressiveness trait variation along a leaf maturity gradient in a biotrophic plant pathogen, Frontiers in Plant Science, vol.9, p.1396, 2018. ,
DOI : 10.3389/fpls.2018.01396
URL : https://hal.archives-ouvertes.fr/hal-01901489
How can we achieve durable disease resistance in agricultural ecosystems, New Phytologist, vol.185, pp.3-5, 2010. ,
How can research on pathogen population biology suggest disease management strategies? The example of barley scald (Rhynchosporium commune), Plant Pathology, vol.64, pp.1005-1013, 2015. ,
Pathogen population genetics, evolutionary potential, and durable resistance, Annual Review of Phytopathology, vol.40, pp.349-379, 2002. ,
Impacts of resistance gene genetics, function, and evolution on a durable future, Annual Review of Phytopathology, vol.51, pp.291-319, 2013. ,
Varietal mixture of poplar clones: Effects on infection by Melampsora larici-populina and on plant growth, European Journal of Forest Pathology, vol.29, pp.411-423, 1999. ,
Virus adaptation to quantitative plant resistance: erosion or breakdown, Journal of Evolutionary Biology, vol.25, pp.2242-2252, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01208594
Is there a trade-off between aggressiveness and overwinter survival in Phytophthora infestans?, Functional Ecology, vol.21, pp.603-610, 2007. ,
Does selection by resistant hosts trigger local adaptation in plant-pathogen systems, Journal of Evolutionary Biology, vol.19, pp.522-531, 2006. ,
Durable resistance: A key to sustainable management of pathogens and pests. Infection, Genetics and Evolution, vol.27, pp.446-455, 2014. ,
The quantitative genetics of physiological and morphological traits in an invasive terrestrial snail: additive vs. non-additive genetic variation, Functional Ecology, vol.28, pp.682-692, 2014. ,
Evolution of tradeoffs between sexual and asexual phases and the role of reproductive plasticity in the genetic architecture of aphid life histories, Evolution, vol.63, pp.2402-2412, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00729198
Potentially durable resistance mechanisms in plants to specialised fungal pathogens, Euphytica, vol.124, pp.201-216, 2002. ,
Estimation of heritability and prediction of selection response in plant populations, Critical Reviews in Plant Sciences, vol.10, pp.235-322, 1991. ,
Family-based designs for genome-wide association studies, Nature Reviews Genetics, vol.12, pp.465-474, 2011. ,
Influence des conditions biotiques et abiotiques sur la cinétique de développement d'un champignon biotrophe : Melampsora larici-populina, agent de la rouille du peuplier, 2018. ,
Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies, New Phytologist, vol.183, pp.190-199, 2009. ,
Genome wide association identifies novel loci involved in fungal communication, PLoS Genetics, vol.9, p.1003669, 2013. ,
Aggressiveness and its role in the adaptation of plant pathogens, Plant Pathology, vol.58, pp.409-424, 2009. ,
Quantitative inoculations of poplars with Melampsora larici-populina, European Journal of Plant Pathology, vol.109, pp.269-276, 2003. ,
Étude des traits d'histoire de vie de Melampsora larici-populina, agent de la rouille du peuplier: de leur déterminisme génétique à leurs conséquences évolutives, 2015. ,
Les contournements de résistance par Melampsora larici-populina, l'agent de la rouille du peuplier : impact démographique et déterminisme génétique, 2015. ,
Demographic and genomic consequences of a major event of adaptation in the pathogenic fungus Melampsora larici-populina ,
The escalatory Red Queen: Population extinction and replacement following arms race dynamics in poplar rust, Molecular Ecology, vol.26, pp.1902-1918, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01564550
Quantitative resistance to plant pathogens in pyramiding strategies for durable crop protection, Frontiers in Plant Science, vol.8, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01905321
Interactions between poplar clones and Melampsora populations and their implications for breeding for durable resistance, Rust diseases of willow and poplar, pp.139-154, 2005. ,
Using population and comparative genomics to understand the genetic basis of effectordriven fungal pathogen evolution, Frontiers in Plant Science, vol.8, p.119, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01530810
Shades of gray: the world of quantitative disease resistance, Trends in Plant Science, vol.14, pp.21-29, 2009. ,
Wheat leaf rust uredospore production and carbon and nitrogen export in relation to lesion size and density, Phytopathology, vol.92, pp.762-768, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-01959678
Wheat leaf rust uredospore production on adult plants: influence of leaf nitrogen content and Septoria tritici blotch, Phytopathology, vol.94, pp.712-721, 2004. ,
The evolution of trade-offs under directional and correlational selection, Evolution, vol.66, pp.2461-2474, 2012. ,
The role of solar radiation, especially ultraviolet, in the mortality of fungal spores, Phytopathology, vol.75, p.510, 1985. ,
Essential plant pathology, 2006. ,
Effect of leaf maturity and shoot age of clones of Populus species on susceptibility to Melampsora larici-populina, Phytopathology, vol.70, pp.548-554, 1980. ,
Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping, Molecular Genetics and Genomics, vol.291, pp.1363-1377, 2016. ,
Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici, Molecular Plant Pathology, vol.19, pp.201-216, 2018. ,
The origins of plant pathogens in agro-ecosystems, Annual Review of Phytopathology, vol.46, pp.75-100, 2008. ,
Population genetics of fungal and Oomycete effectors involved in gene-for-gene interactions, Molecular Plant-Microbe Interactions, vol.22, pp.371-380, 2009. ,
Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation: Coevolution in a wild host-pathogen system, Ecology Letters, vol.15, pp.425-435, 2012. ,
Flavan-3-ols are an effective chemical defense against rust infection, Plant Physiology, vol.175, pp.1560-1578, 2017. ,
Coevolution of recovery ability and virulence, Proceedings of the Royal Society B: Biological Sciences, vol.265, pp.317-325, 1998. ,
Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs, Evolutionary Applications, vol.7, pp.370-380, 2014. ,
Plant Diseases: Epidemics and Control, 1963. ,
Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi, Molecular Phylogenetics and Evolution, vol.66, pp.628-644, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01577787
Ecological relationships of co-occurring goldenrods (Solidago: Compositae), The American Naturalist, vol.110, pp.959-971, 1976. ,
Molecular characterization of gene-for-gene systems in plant-fungus interactions and the application of avirulence genes in control of plant pathogens, Annual Review of Phytopathology, vol.30, pp.391-418, 1992. ,
Rare-variant association testing for sequencing data with the sequence kernel association test, The American Journal of Human Genetics, vol.89, pp.82-93, 2011. ,
Influence des processus démographiques sur la structure et les caractéristiques génétiques des champignons phytopathogènes : cas de l'agent de la rouille du peuplier Melampsora larici-populina, 2011. ,
Breakdown of Rlm3 resistance in the Brassica napus-Leptosphaeria maculans pathosystem in western Canada, European Journal of Plant Pathology, vol.145, pp.659-674, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01462748