. Aarts, Blood platelets are concentrated near the wall and red blood cells, the center in flowing blood, vol.8, pp.819-824, 1988.

. Abu-lail, N. I. Camesano-;-abu-lail, and T. A. Camesano, Role of ionic strength on the relationship of biopolymer conformation, DLVO contributions, and steric interactions to bioadhesion of Pseudomonas putida KT2442, Biomacromolecules, vol.4, issue.4, pp.1000-1012, 2003.

A. , C. Adams, J. Corbett, D. Agrawal, and R. , Transient shear banding in the nematic dumbbell model of liquid crystalline polymers, Food Biotechnology, vol.19, issue.3, pp.227-246, 2005.

M. Aguirre and M. D. Collins, Lactic acid bacteria and human clinical infection, Journal of Applied Bacteriology, vol.75, issue.2, pp.95-107, 1993.

A. , Quantification of Adhesion Force of Bacteria on the Surface of Biomaterials: Techniques and Assays, ACS Biomaterials Science & Engineering, vol.5, issue.5, pp.2093-2110, 2019.

. [alamprese, Effects of lactobacillus rhamnosus GG addition in ice cream, International Journal of Dairy Technology, vol.58, issue.4, pp.200-206, 2005.

. [alamprese, Survival of lactobacillus johnsonii la1 and influence of its addition in retailmanufactured ice cream produced with different sugar and fat concentrations, International Dairy Journal, vol.12, issue.2, pp.201-208, 2002.

[. Alegre, Microbiological and physicochemical quality of fresh-cut apple enriched with the probiotic strain lactobacillus rhamnosus GG, Food Microbiology, vol.28, issue.1, pp.59-66, 2011.

A. , Identification and phenotypic characterization of the cell-division protein CdpA, Gene, vol.342, issue.1, pp.189-197, 2004.

C. Altieri-;-altieri, Dairy propionibacteria as probiotics: recent evidences, World Journal of Microbiology and Biotechnology, vol.32, issue.10, p.172, 2016.

A. , Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.

. Amir, Bending forces plastically deform growing bacterial cell walls, Proceedings of the National Academy of Sciences, vol.111, issue.16, pp.5778-5783, 2014.

A. Friedman-;-an, Y. H. Friedman, and R. J. , Concise review of mechanisms of bacterial adhesion to biomaterial surfaces, Journal of Biomedical Materials Research, vol.43, issue.3, pp.338-348, 1998.

. Ananta, Cellular injuries and storage stability of spray-dried lactobacillus rhamnosus GG, International Dairy Journal, vol.15, issue.4, pp.399-409, 2005.

. Andersson, , 2006.

, A sticky chain model of the elongation and unfolding of escherichia coli p pili under stress, Biophysical Journal, vol.90, issue.5, pp.1521-1534

. Andersson, Dynamic force spectroscopy of e. coli p pili, Biophysical Journal, vol.91, issue.7, pp.2717-2725, 2006.

. Apostolou, Good adhesion properties of probiotics: a potential risk for bacteremia?, FEMS Immunology & Medical Microbiology, vol.31, issue.1, pp.35-39, 2001.

A. , Dynamic shear rheology of a thixotropic suspension: Comparison of an improved structure-based model with large amplitude oscillatory shear experiments, Journal of Rheology, vol.60, issue.3, pp.433-450, 2016.

. Arnaud, Shear stress effects on growth and activity of Lactobacillus delbrueckii subsp. bulgaricus, Journal of Biotechnology, vol.29, issue.1, pp.157-175, 1993.

J. A. Aström, Statistical models of brittle fragmentation, Advances in Physics, vol.55, issue.3-4, pp.247-278, 2006.

N. Audoly, B. Audoly, and S. Neukirch, Fragmentation of rods by cascading cracks: why spaghetti do not break in half, Physical Review Letters, vol.95, issue.9, p.95505, 2005.

[. Auletta, Imaging bacteria with radiolabelled quinolones, cephalosporins and siderophores for imaging infection: a systematic review, Clinical and Translational Imaging, vol.4, issue.4, pp.229-252, 2016.

. Auty, Direct in situ viability assessment of bacteria in probiotic dairy products using viability staining in conjunction with confocal scanning laser microscopy, Applied and Environmental Microbiology, vol.67, issue.1, pp.420-425, 2001.

. Avadhanula, Respiratory viruses augment the adhesion of bacterial pathogens to respiratory epithelium in a viral species-and cell typedependent manner, Journal of Virology, vol.80, issue.4, pp.1629-1636, 2006.

L. Axelsson, Lactic acid bacteria: classification and physiology, Lactic Acid Bacteria: Microbiological and Functional Aspects, pp.1-66, 2004.

H. P. Azikri-de-deus and G. S. Dupim, On behavior of the thixotropic fluids, Physics Letters A, vol.377, issue.6, pp.478-485, 2013.

A. , Biofilm development in L. fermentum under shear flow and sequential GIT digestion, FEMS Microbiology Letters, issue.6, p.366, 2019.

[. Badel, New perspectives for lactobacilli exopolysaccharides, Biotechnology Advances, vol.29, issue.1, pp.54-66, 2011.

[. Bagchi, Oxygen free radical scavenging abilities of vitamins c and e, and a grape seed proanthocyanidin extract in vitro, Research Communications in Molecular Pathology and Pharmacology, vol.95, issue.2, pp.179-189, 1997.

[. Bajpai, Exopolysaccharide and lactic acid bacteria: Perception, functionality and prospects, Bangladesh Journal of Pharmacology, vol.11, issue.1, pp.1-23, 2015.

[. Balmforth, Yielding to stress: Recent developments in viscoplastic fluid mechanics, Annual Review of Fluid Mechanics, vol.46, issue.1, pp.121-146, 2014.
URL : https://hal.archives-ouvertes.fr/hal-00973814

J. Banasiak, Shattering and non-uniqueness in fragmentation models-an analytic approach, Physica D: Nonlinear Phenomena, vol.222, issue.1, pp.63-72, 2006.

N. Banasiak, J. Banasiak, and S. O. Noutchie, Controlling number of particles in fragmentation equations, Physica D: Nonlinear Phenomena, vol.239, issue.15, pp.1422-1435, 2010.

[. Bang, Transcriptional Response and Enhanced Intestinal Adhesion Ability of Lactobacillus rhamnosus GG after Acid Stress, Journal of Microbiology and Biotechnology, vol.28, issue.10, pp.1604-1613, 2018.

[. Baravian, Modelling thixotropy using a novel structural kinetics approach: Basis and application to a solution of iota carrageenan, Journal of Texture Studies, vol.27, issue.4, pp.371-390, 1996.

[. Barbosa, Pediococcus acidilactici as a potential probiotic to be used in food industry, International Journal of Food Science & Technology, vol.50, issue.5, pp.1151-1157, 2015.

J. Barbosa and P. Teixeira, Development of probiotic fruit juice powders by spray-drying: A review, Food Reviews International, vol.33, issue.4, pp.335-358, 2017.

[. Barbé, The heat treatment and the gelation are strong determinants of the kinetics of milk proteins digestion and of the peripheral availability of amino acids, Food Chemistry, vol.136, issue.3, pp.1203-1212, 2013.

H. A. Barnes, Thixotropy-a review, Journal of Non-Newtonian Fluid Mechanics, vol.70, issue.1, pp.1-33, 1997.

[. Barnes, Correlated XPS, AFM and bacterial adhesion studies on milk and milk proteins adherent to stainless steel, Biofouling, vol.17, issue.1, pp.1-22, 2001.

[. Barnes, Effect of milk proteins on adhesion of bacteria to stainless steel surfaces, Applied and Environmental Microbiology, vol.65, issue.10, pp.4543-4548, 1999.

S. Barrett, J. W. Barrett, and E. Süli, Numerical approximation of corotational dumbbell models for dilute polymers, IMA Journal of Numerical Analysis, vol.29, issue.4, pp.937-959, 2009.

S. Barrett, J. W. Barrett, and E. Süli, Existence of global weak solutions to the kinetic Hookean dumbbell model for incompressible dilute polymeric fluids, Nonlinear Analysis: Real World Applications, vol.39, pp.362-395, 2018.

[. Bast, Tensile testing to quantitate the anisotropy and strain hardening of mozzarella cheese, International Dairy Journal, vol.44, pp.6-14, 2015.

[. Beaussart, Single-cell force spectroscopy of probiotic bacteria, Biophysical Journal, vol.104, issue.9, pp.1886-1892, 2013.

. Bellon-fontaine, Microbial adhesion to solvents: a novel method to determine the electron-donor/electron-acceptor or Lewis acid-base properties of microbial cells, Colloids and Surfaces B: Biointerfaces, vol.7, issue.1, pp.47-53, 1996.

[. Bergonzelli, GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori, Infection and Immunity, vol.74, issue.1, pp.425-434, 2006.

[. Berne, Bacterial adhesion at the single-cell level, Nature Reviews Microbiology, vol.16, issue.10, pp.616-627, 2018.

G. C. Berry and D. J. Plazek, On the use of stretchedexponential functions for both linear viscoelastic creep and stress relaxation, Rheologica Acta, vol.36, issue.3, pp.320-329, 1997.

[. Berthet, Microfluidic Fabrication Solutions for Tailor-Designed Fiber Suspensions, Applied Sciences, vol.6, issue.12, p.385, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02167938

. Berzins, Influence of Micromixing on Microorganisms and Products, Acta Biotechnologica, vol.21, issue.2, pp.155-170, 2001.

[. Betoret, No invasive methodology to produce a probiotic low humid apple snack with potential effect against helicobacter pylori, Journal of Food Engineering, vol.110, issue.2, pp.289-293, 2012.

[. Betoret, Development of probiotic-enriched dried fruits by vacuum impregnation, Journal of Food Engineering, vol.56, issue.2, pp.273-277, 2003.

[. Bierne, Internalins: a complex family of leucine-rich repeat-containing proteins in Listeria monocytogenes, Microbes and Infection, vol.9, issue.10, pp.1156-1166, 2007.

[. Bird, Dynamics of polymeric liquids, Fluid mechanics, vol.1, 1987.

O. Björnham and O. Axner, Multipili attachment of bacteria with helixlike pili exposed to stress, The Journal of Chemical Physics, vol.130, issue.23, p.235102, 2009.

W. Blair, S. Blair, W. , and G. , Foodstuffs: their plasticity, fluidity and consistency, 1953.

[. Bodelon, Immunoglobulin domains in escherichia coli and other enterobacteria: from pathogenesis to applications in antibody technologies, FEMS microbiology reviews, vol.37, issue.2, pp.204-250, 2013.

[. Boekhorst, Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria, Microbiology, vol.152, issue.1, pp.273-280, 2006.

[. Bonanno, Influence of stress factors related to cheese-making process and to STEC detection procedure on the induction of stx phages from STEC o26:h11, Frontiers in Microbiology, vol.8, 2017.

[. Bonito, Mathematical analysis of a simplified Hookean dumbbells model arising from viscoelastic flows, Journal of Evolution Equations, vol.6, issue.3, pp.381-398, 2006.

[. Bonn, Yield stress materials in soft condensed matter, Reviews of Modern Physics, vol.89, issue.3, p.35005, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01589027

. Borges, A feasibility study of lactobacillus plantarum in fruit powders after processing and storage, International Journal of Food Science & Technology, vol.51, issue.2, pp.381-388, 2016.

. Borges, Chapter 56 -gynecological health and probiotics a2 -watson, ronald ross, Probiotics, Prebiotics, and Synbiotics, pp.741-752, 2016.

[. Bos, Physico-chemistry of initial microbial adhesive interactions-its mechanisms and methods for study, FEMS microbiology reviews, vol.23, issue.2, pp.179-230, 1999.

[. Bouchoux, How to Squeeze a Sponge: Casein Micelles under Osmotic Stress, a SAXS Study, Biophysical Journal, vol.99, issue.11, pp.3754-3762, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02104514

. Boulos, , 1999.

. Live/dead and . Baclight, application of a new rapid staining method for direct enumeration of viable and total bacteria in drinking water, Journal of Microbiological Methods, vol.37, issue.1, pp.77-86

[. Bove, Lactobacillus plantarum passage through an oro-gastro-intestinal tract simulator: Carrier matrix effect and transcriptional analysis of genes associated to stress and probiosis, Microbiological Research, vol.168, issue.6, pp.351-359, 2013.

[. Boylston, Incorporation of bifidobacteria into cheeses: challenges and rewards, International Dairy Journal, vol.14, issue.5, pp.375-387, 2004.

[. Bridier, , 2015.

, Fluorescence-based tools for single-cell approaches in food microbiology, International Journal of Food Microbiology, vol.213, pp.2-16

J. S. Brookman, Further studies on the mechanism of cell disruption by extreme pressure extrusion, Biotechnology and Bioengineering, vol.17, issue.4, pp.465-479, 1975.

[. Brown, Wall Teichoic Acids of Gram-Positive Bacteria. Annual review of microbiology, p.67, 2013.

[. Brownlow, Bovine beta-lactoglobulin at 1.8 angstrom resolution -still an enigmatic lipocalin, Structure, vol.5, issue.4, pp.481-495, 1997.

[. Buck, Functional Analysis of Putative Adhesion Factors in Lactobacillus acidophilus NCFM, Applied and Environmental Microbiology, vol.71, issue.12, pp.8344-8351, 2005.

[. Bunt, The effects of pH, ionic strength and polyvalent ions on the cell surface hydrophobicity of Escherichia coli evaluated by the BATH and HIC methods, International Journal of Pharmaceutics, vol.113, issue.2, pp.257-261, 1995.

J. Burgain, Microencapsulation de bactéries probiotiques dans des matrices laitières: Etude des mécanismes de formation par une approche multi-échelle, Procédés Biotechnologiques et Alimentaires, 2013.

[. Burgain, Encapsulation of lactobacillus rhamnosus GG in microparticles: Influence of casein to whey protein ratio on bacterial survival during digestion, Innovative Food Science & Emerging Technologies, vol.19, pp.233-242, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01272772

[. Burgain, In vitro interactions between probiotic bacteria and milk proteins probed by atomic force microscopy, Colloids and Surfaces B: Biointerfaces, vol.104, pp.153-162, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01272759

[. Burgain, Encapsulation of probiotic living cells: From laboratory scale to industrial applications, Journal of Food Engineering, vol.104, issue.4, pp.467-483, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02443578

[. Burgain, Lactic acid bacteria in dairy food: Surface characterization and interactions with food matrix components, Advances in Colloid and Interface Science, vol.213, pp.21-35, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01273472

[. Burgain, Significance of bacterial surface molecules interactions with milk proteins to enhance microencapsulation of lactobacillus rhamnosus GG, Food Hydrocolloids, vol.41, pp.60-70, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01273470

[. Burgain, Impacts of pH-mediated EPS structure on probiotic bacterial pili-whey proteins interactions, Colloids and Surfaces B: Biointerfaces, vol.134, pp.332-338, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01248665

H. J. Busscher and A. H. Weerkamp, Specific and non-specific interactions in bacterial adhesion to solid substrata, FEMS Microbiology Letters, vol.46, issue.2, pp.165-173, 1987.

[. Cabeen, Bacterial cell curvature through mechanical control of cell growth, The EMBO Journal, vol.28, issue.9, pp.1208-1219, 2009.

J. Cabeen, M. T. Cabeen, and C. Jacobs-wagner, Bacterial cell shape, Nature Reviews Microbiology, vol.3, issue.8, pp.601-610, 2005.

K. Call, E. K. Call, and T. R. Klaenhammer, Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria, 2013.

[. Carlson, Kinetics of milk coagulation: II. kinetics of the secondary phase: Micelle flocculation, Biotechnology and Bioengineering, vol.29, issue.5, pp.590-600, 1987.

[. Carlson, The kinetics of milk coagulation: IV. the kinetics of the gel-firming process, Biotechnology and Bioengineering, vol.29, issue.5, pp.612-624, 1987.

[. Carmona, From fracture to fragmentation: Discrete element modeling, The European Physical Journal Special Topics, vol.223, issue.11, pp.2369-2382, 2014.

[. Carr, The lactic acid bacteria: a literature survey, Critical Reviews in Microbiology, vol.28, issue.4, pp.281-370, 2002.

[. Carvalho, Effects of various sugars added to growth and drying media upon thermotolerance and survival throughout storage of freeze-dried lactobacillus delbrueckii ssp. bulgaricus, Biotechnology Progress, vol.20, issue.1, pp.248-254, 2004.

[. Castro, Biocheese: A food probiotic carrier, BioMed Research International, p.723056, 2015.

[. Cava, Modes of cell wall growth differentiation in rod-shaped bacteria, Current Opinion in Microbiology, vol.16, issue.6, pp.731-737, 2013.

[. Chagnot, Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective. Frontiers in Microbiology, 4, Critical Reviews in Food Science and Nutrition, vol.45, issue.1, pp.61-84, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01204318

[. Champagne, C. P. Gardner-;-champagne, and N. J. Gardner, Effect of storage in a fruit drink on subsequent survival of probiotic lactobacilli to gastro-intestinal stresses, Food Research International, vol.41, issue.5, pp.539-543, 2008.

K. Chartier, M. Chartier, S. Kulakauskas, and . Charalampopoulos, Growth studies of potentially probiotic lactic acid bacteria in cereal-based substrates, Journal of Applied Microbiology, vol.13, issue.1, pp.851-859, 2002.

P. Charalampopoulos, D. Charalampopoulos, and S. S. Pandiella, Survival of human derived lactobacillus plantarum in fermented cereal extracts during refrigerated storage, LWT -Food Science and Technology, vol.43, issue.3, pp.431-435, 2010.

[. Charnchai, Effects of the food manufacturing chain on the viability and functionality of bifidobacterium animalis through simulated gastrointestinal conditions, PLOS ONE, vol.11, issue.6, p.157958, 2016.

[. Charteris, Development and application of an in vitro methodology to determine the transit tolerance of potentially probiotic lactobacillus and bifidobacterium species in the upper human gastrointestinal tract, Journal of Applied Microbiology, vol.84, issue.5, pp.759-768, 1998.

[. Chiba, Brownian Dynamics Simulation of FENE Dumbbell Model for Dilute Polymer Solutions in Extensional Flow: Effect of Distribution of FENE Parameter and Relaxation Time, Nihon Reoroji Gakkaishi, vol.27, issue.2, pp.79-86, 1999.

[. Chiba, Brownian Dynamics Simulation of FENE Dumbbell Model for Dilute Polymer Solutions in Shear Flow: Effects of Distributions of FENE Parameter and Relaxation Time, Nihon Reoroji Gakkaishi, vol.27, issue.1, pp.31-42, 1999.

[. Chumphon, Development of rice as potential carriers for probiotic lactobacillus amylovorus, International Journal of Food Science & Technology, vol.51, issue.5, pp.1260-1267, 2016.

. Clark, P. F. Clark, and W. H. Ruehl, Morphological Changes During the Growth of Bacteria, Journal of Bacteriology, vol.4, issue.6, pp.615-629, 1919.

[. Coda, , 2012.

, Yogurt-like beverages made of a mixture of cereals, soy and grape must: Microbiology, texture, nutritional and sensory properties, International Journal of Food Microbiology, vol.155, issue.3, pp.120-127

[. Coley, The linkage between teichoic acid and peptidoglycan in bacterial cell walls, FEBS Letters, vol.88, issue.1, pp.1-9, 1978.

[. Coman, Functional foods as carriers for SYNBIO, a probiotic bacteria combination, International Journal of Food Microbiology, vol.157, issue.3, pp.346-352, 2012.

D. Comfort and R. T. Clubb, A comparative genome analysis identifies distinct sorting pathways in gram-positive bacteria, Infection and Immunity, vol.72, issue.5, pp.2710-2722, 2004.

[. Conway, Survival of lactic acid bacteria in the human stomach and adhesion to intestinal cells, Journal of Dairy Science, vol.70, issue.1, pp.1-12, 1987.

[. Corbo, Microbiological and biochemical properties of canestrato pugliese hard cheese supplemented with bifidobacteria, Journal of Dairy Science, vol.84, issue.3, pp.551-561, 2001.

[. Corcoran, Life under stress: the probiotic stress response and how it may be manipulated, Current Pharmaceutical Design, vol.14, issue.14, pp.1382-1399, 2008.

[. Corcoran, Survival of probiotic lactobacilli in acidic environments is enhanced in the presence of metabolizable sugars, Applied and Environmental Microbiology, vol.71, issue.6, pp.3060-3067, 2005.

[. Corredig, Rennet-induced aggregation of milk containing homogenized fat globules. effect of interacting and non-interacting fat globules observed using diffusing wave spectroscopy, International Dairy Journal, vol.21, issue.9, pp.679-684, 2011.

[. Cotter, Bacteriocins: developing innate immunity for food, Nature Reviews. Microbiology, vol.3, issue.10, pp.777-788, 2005.

[. Cousin, Assessment of the probiotic potential of a dairy product fermented by propionibacterium freudenreichii in piglets, Journal of Agricultural and Food Chemistry, vol.60, issue.32, pp.7917-7927, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01209320

[. Cousin, Detection and Genomic Characterization of Motility in Lactobacillus curvatus: Confirmation of Motility in a Species outside the Lactobacillus salivarius Clade, Applied and Environmental Microbiology, vol.81, issue.4, pp.1297-1308, 2015.

[. Cronin, Progress in genomics, metabolism and biotechnology of bifidobacteria, International Journal of Food Microbiology, vol.149, issue.1, pp.4-18, 2011.

, Rheology of non-newtonian fluids: a new flow equation for pseudoplastic systems, Journal of colloid science, vol.20, issue.5, pp.417-437, 1965.

[. Cruz, Ice-cream as a probiotic food carrier, Food Research International, vol.42, issue.9, pp.1233-1239, 2009.

L. Cvetkovska, Etude de la déstabilisation du lait en présence de bactéries lactiques, Cvetkovska, 2018.

. Céspedes, Performance in nondairy drinks of probiotic l. casei strains usually employed in dairy products, Journal of Food Science, vol.78, issue.5, pp.756-762, 2013.

[. Córdoba, A single-chain model for active gels I: active dumbbell model, vol.4, pp.17935-17949, 2014.

D. G. Dalgleish, Proteolysis and aggregation of casein micelles treated with immobilized or soluble chymosin, Journal of Dairy Research, vol.46, issue.4, pp.653-661, 1979.

D. G. Dalgleish, On the structural models of bovine casein micelles-review and possible improvements, Soft Matter, vol.7, issue.6, pp.2265-2272, 2011.

. Daniel, Selecting lactic acid bacteria for their safety and functionality by use of a mouse colitis model, Applied and Environmental Microbiology, vol.72, issue.9, pp.5799-5805, 2006.

. Danne, C. Dramsi-;-danne, and S. Dramsi, Pili of Gram-positive bacteria: roles in host colonization, Research in Microbiology, vol.163, issue.9, pp.645-658, 2012.

D. Shah-;-dave, R. I. Shah, and N. P. , Ingredient supplementation effects on viability of probiotic bacteria in yogurt, Journal of Dairy Science, vol.81, issue.11, pp.2804-2816, 1998.

G. A. Davies and J. R. Stokes, Thin film and high shear rheology of multiphase complex fluids, Journal of Non-Newtonian Fluid Mechanics, vol.148, issue.1, pp.73-87, 2008.

[. Bellis, Probiotic table olives: Microbial populations adhering on olive surface in fermentation sets inoculated with the probiotic strain lactobacillus paracasei IMPC2.1 in an industrial plant, International Journal of Food Microbiology, vol.140, issue.1, pp.6-13, 2010.

P. Gennes-;-de-gennes, Relaxation Anomalies in Linear Polymer Melts, Macromolecules, vol.35, issue.9, pp.3785-3786, 2002.

. [de-kruif, Casein micelles and their internal structure, Advances in Colloid and Interface Science, pp.36-52, 2012.

. [de-man, A medium for the cultivation of lactobacilli, Journal of Applied Bacteriology, vol.23, issue.1, pp.130-135, 1960.

. De-souza-lima, Changing spray-dried lactose-whey protein isolate particle structure with drying conditions, Proceedings of 21th International Drying Symposium. Universitat Politècnica València, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02267507

S. Mendes, P. R. Thompson-;-de-souza-mendes, and R. L. Thompson, A critical overview of elasto-viscoplastic thixotropic modeling, Journal of Non-Newtonian Fluid Mechanics, pp.187-188, 2012.

W. M. Vos-;-de-vos, Systems solutions by lactic acid bacteria: from paradigms to practice, Microbial Cell Factories, issue.10, p.2, 2011.

. [de-vuyst-;-de and L. Vuyst, Technology aspects related to the application of functional starter cultures, Food Technology and Biotechnology, vol.38, issue.2, pp.105-112, 2000.

[. Deepika, Effect of food models and low-temperature storage on the adhesion of lactobacillus rhamnosus GG to caco-2 cells, Journal of Agricultural and Food Chemistry, vol.59, issue.16, pp.8661-8666, 2011.

[. Degond, Kinetic models for dilute solutions of dumbbells in non-homogeneous flows revisited, Journal of Non-Newtonian Fluid Mechanics, vol.165, issue.9, pp.509-518, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00995854

[. Delcour, The biosynthesis and functionality of the cell-wall of lactic acid bacteria. Antonie van Leeuwenhoek, pp.159-184, 1999.

[. Desvaux, Surfaceome and Proteosurfaceome in Parietal Monoderm Bacteria: Focus on Protein Cell-Surface Display, Frontiers in Microbiology, p.9, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01727158

[. Desvaux, Protein cell surface display in Gram-positive bacteria: from single protein to macromolecular protein structure, FEMS Microbiology Letters, vol.256, issue.1, pp.1-15, 2006.

[. Deutsch, Contribution of surface beta-glucan polysaccharide to physicochemical and immunomodulatory properties of propionibacterium freudenreichii, Applied and Environmental Microbiology, vol.78, issue.6, pp.1765-1775, 2012.

[. Dewettinck, Nutritional and technological aspects of milk fat globule membrane material, International Dairy Journal, vol.18, issue.5, pp.436-457, 2008.

. Dhanani, A. S. Bagchi-;-dhanani, and T. Bagchi, The expression of adhesin EF-Tu in response to mucin and its role in Lactobacillus adhesion and competitive inhibition of enteropathogens to mucin, Journal of Applied Microbiology, vol.115, issue.2, pp.546-554, 2013.

[. Diao, Native alpha-synuclein induces clustering of synapticvesicle mimics via binding to phospholipids and synaptobrevin-2/VAMP2. eLife, vol.2, p.592, 2013.

[. Diaz, Biofilm-forming capacity in biogenic amine-producing bacteria isolated from dairy products, Frontiers in Microbiology, vol.7, 2016.

. Dilly, A. K. Rajala-;-dilly, and R. V. Rajala, Insulin growth factor 1 receptor/PI3k/AKT survival pathway in outer segment membranes of rod photoreceptors, Investigative Ophthalmology & Visual Science, vol.49, issue.11, pp.4765-4773, 2008.

M. ;. Dimitriou, C. J. Dimitriou, and G. H. Mckinley, A comprehensive constitutive law for waxy crude oil: a thixotropic yield stress fluid, Soft Matter, vol.10, issue.35, pp.6619-6644, 2014.

[. Dimitrov, In vitro characterization of the adhesive factors of selected probiotics to caco-2 epithelium cell line, Biotechnology & Biotechnological Equipment, vol.28, issue.6, pp.1079-1083, 2014.

[. Ditu, Immunomodulatory effect of non-viable components of probiotic culture stimulated with heat-inactivated escherichia coli and bacillus cereus on holoxenic mice, Microbial Ecology in Health and Disease, p.25, 2014.

[. Doherty, Use of viability staining in combination with flow cytometry for rapid viability assessment of lactobacillus rhamnosus GG in complex protein matrices, Journal of Microbiological Methods, vol.82, issue.3, pp.301-310, 2010.

. Domínguez-ramírez, beta-lactoglobulin's conformational requirements for ligand binding at the calyx and the dimer interphase: a flexible docking study, PloS One, vol.8, issue.11, p.79530, 2013.

[. Douillard, F. P. De-vos-;-douillard, and W. M. De-vos, Functional genomics of lactic acid bacteria: from food to health, Microbial Cell Factories, vol.13, issue.1, p.8, 2014.

[. Douillard, Comparative genomic and functional analysis of 100 lactobacillus rhamnosus strains and their comparison with strain GG, PLOS Genetics, vol.9, issue.8, p.1003683, 2013.

[. Douëllou, Milk fat globules hamper adhesion of enterohemorrhagic escherichia coli to enterocytes: In vitro and in vivo evidence, Frontiers in Microbiology, p.9, 2018.

[. Douëllou, Invited review: Anti-adhesive properties of bovine oligosaccharides and bovine milk fat globule membraneassociated glycoconjugates against bacterial food enteropathogens, Journal of Dairy Science, vol.100, issue.5, pp.3348-3359, 2017.

. Du-roure, Dynamics of flexible fibers in viscous flows and fluids, Annual Review of Fluid Mechanics, vol.51, issue.1, pp.539-572, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02167899

K. Dullaert and J. Mewis, A structural kinetics model for thixotropy, Journal of Non-Newtonian Fluid Mechanics, vol.139, issue.1, pp.21-30, 2006.

[. Dutta, Synthesis, in vitro evaluation, and 68ga-radiolabeling of CDP1 toward PET/CT imaging of bacterial infection, Chemical Biology & Drug Design, vol.90, issue.4, pp.572-579, 2017.

D. and O. , Microencapsulation of new probiotic formulations for gastrointestinal delivery: in vitro study to assess viability and biological properties, Applied Microbiology and Biotechnology, vol.99, issue.22, pp.9779-9789, 2015.

[. , Well-Posedness for the Dumbbell Model of Polymeric Fluids, Communications in Mathematical Physics, vol.248, issue.2, pp.409-427, 2004.

[. Ebner, Probiotics in dietary guidelines and clinical recommendations outside the european union, World Journal of Gastroenterology, vol.20, issue.43, p.16095, 2014.

. Edwards, A novel device for the assessment of shear effects on suspended microbial cultures, Applied Microbiology and Biotechnology, vol.34, issue.11, pp.190-195, 1989.

. Edwards, Structure and Stability of Whey Proteins, Milk Proteins, pp.163-203, 2008.

. Egan, A. J. Vollmer-;-egan, and W. Vollmer, The physiology of bacterial cell division, Annals of the New York Academy of Sciences, vol.1277, issue.1, pp.8-28, 2013.

. El'darov, Kinetic Model of Polymer Degradation Occurring during Extrusion Process, International Journal of Polymeric Materials and Polymeric Biomaterials, vol.29, issue.1-2, pp.1-14, 1995.

. Elias-argote, Dairy Ingredients Containing Milk Fat Globule Membrane: Description, Composition, and Industrial Potential, Advances in Dairy Ingredients, pp.71-98, 2013.

[. Endo, Food matrices and cell conditions influence survival of lactobacillus rhamnosus GG under heat stresses and during storage, International Journal of Food Microbiology, vol.174, pp.110-112, 2014.

D. M. Engesser and W. P. Hammes, Non-heme catalase activity of lactic acid bacteria, Systematic and applied microbiology, vol.17, issue.1, pp.11-19, 1994.

R. Engler, C. R. Engler, and C. W. Robinson, Disruption of Candida utilis cells in high pressure flow devices*, Biotechnology and Bioengineering, vol.23, issue.4, pp.765-780, 1981.

R. Engler, C. R. Engler, and C. W. Robinson, Effects of organism type and growth conditions on cell disruption by impingement, Biotechnology Letters, vol.3, issue.2, pp.83-88, 1981.

[. Etzold, Structural basis for adaptation of lactobacilli to gastrointestinal mucus, Environmental Microbiology, vol.16, issue.3, pp.888-903, 2014.

J. M. Evers, The milk fat globule membrane: compositional and structural changes post secretion by the mammary secretory cell, International Dairy Journal, vol.14, issue.8, pp.661-674, 2004.

M. ;. Ewoldt, R. H. Ewoldt, and G. H. Mckinley, Mapping thixo-elastovisco-plastic behavior, Rheologica Acta, vol.56, issue.3, pp.195-210, 2017.

[. Faber, Describing the firmness, springiness and rubberiness of food gels using fractional calculus. part i: Theoretical framework, Food Hydrocolloids, vol.62, pp.311-324, 2017.

[. Faraudo, Understanding diluted dispersions of superparamagnetic particles under strong magnetic fields: a review of concepts, theory and simulations, Soft Matter, vol.9, issue.29, p.6654, 2013.

[. Fernandez, Anti-inflammatory capacity of selected lactobacilli in experimental colitis is driven by NOD2-mediated recognition of a specific peptidoglycan-derived muropeptide, Gut, vol.60, issue.8, pp.1050-1059, 2011.

[. Finn, Nucleic Acids Research, vol.45, pp.190-199, 2017.

R. Firstenberg-eden-;-firstenberg-eden, Attachment of bacteria to meat surfaces: A review, Journal of Food Protection, vol.44, issue.8, pp.602-607, 1981.

W. Fischer, Chapter 10 Lipoteichoic acids and lipoglycans, New Comprehensive Biochemistry, vol.27, pp.199-215, 1994.

V. A. Fischetti-;-fischetti, Surface Proteins on Gram-Positive Bacteria, Microbiology spectrum, vol.7, 2019.

. Fitzsimons, Spatial and temporal distribution of non-starter lactic acid bacteria in cheddar cheese, Journal of Applied Microbiology, vol.90, issue.4, pp.600-608, 2001.

[. Foegeding, A comprehensive approach to understanding textural properties of semi-and soft-solid foods, Journal of Texture Studies, vol.42, issue.2, pp.103-129, 2011.

D. ;. Foegeding, E. A. Foegeding, and M. A. Drake, Invited review: Sensory and mechanical properties of cheese texture1, Journal of Dairy Science, vol.90, issue.4, pp.1611-1624, 2007.

[. Fong, Protein and lipid composition of bovine milk-fat-globule membrane, International Dairy Journal, vol.17, issue.4, pp.275-288, 2007.

[. Ford, Efficacy of prebiotics, probiotics, and synbiotics in irritable bowel syndrome and chronic idiopathic constipation: Systematic review and meta-analysis, The American Journal of Gastroenterology, vol.109, issue.10, pp.1547-1561, 2014.

P. Forquin and F. Hild, A Probabilistic Damage Model of the Dynamic Fragmentation Process in Brittle Materials, Advances in Applied Mechanics, vol.44, pp.1-72, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00521184

[. Foster, Rupture of Bacteria by Explosive Decompression, Journal of Bacteriology, vol.83, issue.2, pp.330-334, 1962.

P. F. Fox, Cheese: chemistry, physics and microbiology, vol.1, p.939445860, 1993.

. Fraggedakis, Yielding the yield-stress analysis: a study focused on the effects of elasticity on the settling of a single spherical particle in simple yield-stress fluids, Soft Matter, vol.12, issue.24, pp.5378-5401, 2016.

. Francius, Stretching polysaccharides on live cells using single molecule force spectroscopy, Nature Protocols, vol.4, issue.6, pp.939-946, 2009.

A. Frederick, C. O. Frederick, and P. J. Armstrong, A mathematical representation of the multiaxial bauschinger effect, Materials at High Temperatures, vol.24, issue.1, pp.1-26, 2007.

. Fronzes, Architectures and biogenesis of non-flagellar protein appendages in gram-negative bacteria, The EMBO Journal, vol.27, issue.17, pp.2271-2280, 2008.

[. Furukawa, Activityinduced clustering in model dumbbell swimmers: The role of hydrodynamic interactions, Physical Review E, vol.90, issue.2, p.22303, 2014.

[. Gadhiya, Current trend and future prospective of functional probiotic milk chocolates and related products: a review, Czech Journal of Food Sciences, vol.33, pp.295-301, 2016.

[. Gao, Impact of ultrasonic power on the structure and emulsifying properties of whey protein isolate under various pH conditions, Process Biochemistry, vol.81, pp.113-122, 2019.

[. Gardiner, Development of a probiotic cheddar cheese containing human-derived lactobacillus paracaseiStrains, Applied and Environmental Microbiology, vol.64, issue.6, pp.2192-2199, 1998.

[. Garrett, Bacterial adhesion and biofilms on surfaces, Progress in Natural Science, vol.18, issue.9, pp.1049-1056, 2008.

[. Gay, A leucine-rich repeat peptide derived from the drosophila toll receptor forms extended filaments with a beta-sheet structure, FEBS Letters, vol.291, issue.1, pp.87-91, 1991.

[. Gentès, Gel formation and rheological properties of fermented milk with in situ exopolysaccharide production by lactic acid bacteria, Dairy Science & Technology, vol.91, issue.5, p.645, 2011.

[. Ghandi, Effect of shear rate and oxygen stresses on the survival of lactococcus lactis during the atomization and drying stages of spray drying: A laboratory and pilot scale study, Journal of Food Engineering, vol.113, issue.2, pp.194-200, 2012.

[. Giaouris, Attachment and biofilm formation by foodborne bacteria in meat processing environments: Causes, implications, role of bacterial interactions and control by alternative novel methods, Meat Science, vol.97, issue.3, pp.298-309, 2014.

C. ;. Gidaspow, D. Gidaspow, and V. Chandra, Unequal granular temperature model for motion of platelets to the wall and red blood cells to the center, Chemical Engineering Science, vol.117, pp.107-113, 2014.

[. Girard, S. Girard, M. Schaffer-lequart, and C. , Gelation and resistance to shearing of fermented milk: Role of exopolysaccharides, International Dairy Journal, vol.17, issue.6, pp.666-673, 2007.

[. Gobbetti, Production of crescenza cheese by incorporation of bifidobacteria, Journal of Dairy Science, vol.81, issue.1, pp.37-47, 1998.

[. Goh, On the mechanics of wire cutting of cheese, Engineering Fracture Mechanics, vol.72, issue.6, pp.931-946, 2005.

[. Goldin, Survival of lactobacillus species (strain GG) in human gastrointestinal tract. Digestive diseases and sciences, vol.37, pp.121-128, 1992.

M. ;. Goldsmith, H. L. Goldsmith, and J. C. Marlow, Flow behavior of erythrocytes. II. particle motions in concentrated suspensions of ghost cells, Journal of Colloid and Interface Science, vol.71, issue.2, pp.383-407, 1979.

[. Golowczyc, Cellular injuries of spray-dried Lactobacillus spp. isolated from kefir and their impact on probiotic properties, International Journal of Food Microbiology, vol.144, issue.3, pp.556-560, 2011.

[. Gomand, Food matrix design for effective lactic acid bacteria delivery, Annual Review of Food Science and Technology, vol.10, issue.1, pp.285-310, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02132412

[. Gomand, Adhesive Interactions Between Lactic Acid Bacteria and ?-Lactoglobulin: Specificity and Impact on Bacterial Location in Whey Protein Isolate, Frontiers in Microbiology, p.10, 1512.
URL : https://hal.archives-ouvertes.fr/hal-02177524

[. Gomand, High-throughput screening approach to evaluate the adhesive properties of bacteria to milk biomolecules, Food Hydrocolloids, vol.84, pp.537-544, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02132419

[. Gomes, Incorporation and survival of Bifidobacterium sp. strain Bo and Lactobacillus acidophilus strain Ki in a cheese product, Netherlands Milk and Dairy Journal, vol.49, issue.2-3, pp.71-95, 1995.

[. Gomes, Survival of probiotic microbial strains in a cheese matrix during ripening: Simulation of rates of salt diffusion and microorganism survival, Journal of Food Engineering, vol.36, issue.3, pp.281-301, 1998.

C. Gonçalves, M. C. Gonçalves, and H. R. Cardarelli, Changes in water mobility and protein stabilization of Mozzarella cheese made under different stretching temperatures, LWT, vol.104, pp.16-23, 2019.

[. Good, The Dynamics of Molecular Evolution Over 60,000 Generations, Nature, vol.551, issue.7678, pp.45-50, 2017.

[. Goodeve, C. F. Whitfield-;-goodeve, and G. W. Whitfield, The measurement of thixotropy in absolute units, Transactions of the Faraday Society, vol.34, issue.0, pp.511-520, 1938.

[. Granato, Cell Surface-Associated Elongation Factor Tu Mediates the Attachment of Lactobacillus johnsonii NCC533 (La1) to Human Intestinal Cells and Mucins, Infection and Immunity, vol.72, issue.4, pp.2160-2169, 2004.

[. Granato, Probiotic dairy products as functional foods, Comprehensive Reviews in Food Science and Food Safety, vol.9, issue.5, pp.455-470, 2010.

[. Granato, Cell Surface-Associated Lipoteichoic Acid Acts as an Adhesion Factor for Attachment of Lactobacillus johnsonii La1 to Human Enterocyte-Like Caco-2 Cells, Applied and Environmental Microbiology, vol.65, issue.3, pp.1071-1077, 1999.

[. Grangette, Enhanced antiinflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids. Proceedings of the, vol.102, pp.10321-10326, 2005.

[. Grover, Elongation of rod-shaped bacteria, Journal of Theoretical Biology, vol.67, issue.2, pp.181-193, 1977.

[. Guergoletto, Dried probiotics for use in functional food applications, 2012.

J. Guerin-;-guerin, Influence de l'ajout d'ingrédients fonctionnels laitiers sur l'encapsulation de L. rhamnosus GG, Procédés Biotechnologiques et Alimentaires, 2017.

[. Guerin, Pili of lactobacillus rhamnosus GG mediate interaction with beta-lactoglobulin, Food Hydrocolloids, vol.58, pp.35-41, 2016.

[. Guerin, Use of imaging techniques to identify efficient controlled release systems of lactobacillus rhamnosus GG during in vitro digestion, Food Funct, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02146509

[. Guerin, Adhesion of lactobacillus rhamnosus GG surface biomolecules to milk proteins, Food Hydrocolloids, vol.82, pp.296-303, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01898949

[. Guerin, Milk fat globule membrane glycoproteins: Valuable ingredients for lactic acid bacteria encapsulation?, Critical Reviews in Food Science and Nutrition, vol.0, issue.0, pp.1-13, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02132397

[. Guerin, Lactobacillus rhamnosus GG encapsulation by spray-drying: Milk proteins clotting control to produce innovative matrices, Journal of Food Engineering, vol.193, pp.10-19, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02146524

[. Guerin, Adhesive interactions between milk fat globule membrane and lactobacillus rhamnosus GG inhibit bacterial attachment to caco-2 TC7 intestinal cell, Colloids and Surfaces B: Biointerfaces, vol.167, pp.44-53, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01898950

[. Gulati, Amino acids activate mTOR complex 1 via ca2+/CaM signaling to hVps34, Cell Metabolism, vol.7, issue.5, pp.456-465, 2008.

[. Guo, Impact of colloidal structure of gastric digesta on in-vitro intestinal digestion of whey protein emulsion gels, Food Hydrocolloids, vol.54, pp.255-265, 2016.

A. Göpferich, Mechanisms of polymer degradation and erosion, Biomaterials, vol.17, issue.2, pp.103-114, 1996.

H. Güde, Grazing by protozoa as selection factor for activated sludge bacteria, Microbial Ecology, vol.5, issue.3, pp.225-237, 1979.

[. Habashi, Angiotensin II type 2 receptor signaling attenuates aortic aneurysm in mice through ERK antagonism, Science, vol.332, issue.6027, pp.361-365, 2011.

[. Haffner, Encapsulation of probiotics: insights into academic and industrial approaches, Materials, vol.3, pp.114-136, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01496637

H. Hahn, M. W. Hahn, and M. G. Höfle, Flagellate Predation on a Bacterial Model Community: Interplay of Size-Selective Grazing, Specific Bacterial Cell Size, and Bacterial Community Composition, Applied and Environmental Microbiology, vol.65, issue.11, pp.4863-4872, 1999.

. Halpin, Inhibition of adhesion of streptococcus mutans to hydroxylapatite by commercial dairy powders and individual milk proteins, European Food Research and Technology, vol.227, issue.5, p.1499, 2008.

[. Harry, Bacterial Cell Division: The Mechanism and Its Precision, In International Review of Cytology, vol.253, pp.27-94, 2006.

E. J. Harry-;-harry, Bacterial cell division: regulating Z-ring formation, Molecular Microbiology, vol.40, issue.4, pp.795-803, 2001.

I. ;. Hayek, S. A. Hayek, and S. A. Ibrahim, Current limitations and challenges with lactic acid bacteria: A review, Food and Nutrition Sciences, vol.04, issue.11, pp.73-87, 2013.

[. Hede, Two-fluid spray atomisation and pneumatic nozzles for fluid bed coating/agglomeration purposes: A review, Chemical Engineering Science, vol.63, issue.14, pp.3821-3842, 2008.

[. Heilmann, Molecular basis of intercellular adhesion in the biofilm-forming staphylococcus epidermidis, Molecular Microbiology, vol.20, issue.5, pp.1083-1091, 1996.

[. Helland, Growth and metabolism of selected strains of probiotic bacteria in milk-and water-based cereal puddings, International Dairy Journal, vol.14, issue.11, pp.957-965, 2004.

K. J. Heller-;-heller, Probiotic bacteria in fermented foods: product characteristics and starter organisms, The American Journal of Clinical Nutrition, vol.73, issue.2, pp.374-379, 2001.

M. Hermansson, The DLVO theory in microbial adhesion, Colloids and Surfaces B: Biointerfaces, vol.14, issue.1, pp.105-119, 1999.

. [hernández-cifre, Brownian dynamics simulation of reversible polymer networks under shear using a non-interacting dumbbell model, Journal of Non-Newtonian Fluid Mechanics, vol.113, issue.2, pp.73-96, 2003.

[. Hickey, The influence of cheese manufacture parameters on cheese microstructure, microbial localisation and their interactions during ripening: A review, Trends in Food Science & Technology, vol.41, issue.2, pp.135-148, 2015.

[. Hickey, Growth and location of bacterial colonies within dairy foods using microscopy techniques: a review, Frontiers in Microbiology, vol.6, issue.99, pp.1-8, 2015.

. Hinrichs, J. Keim-;-hinrichs, and S. Keim, Process-induced stabilizing bonds in fermented milk products, Milchwissenschaft, vol.62, issue.4, pp.422-425, 2007.

C. Holt-;-holt, Structure and Stability of Bovine Casein Micelles, Advances in Protein Chemistry, vol.43, pp.63-151, 1992.

[. Holzmüller, Casein precipitation by acid and rennet coagulation of buttermilk: Impact of pH and temperature on the isolation of milk fat globule membrane proteins, International Dairy Journal, vol.63, pp.115-123, 2016.

K. Holzmüller, W. Holzmüller, and U. Kulozik, Isolation of milk fat globule membrane (MFGM) material by coagulation and diafiltration of buttermilk, International Dairy Journal, vol.63, pp.88-91, 2016.

A. Homayouni, Growth and survival of some probiotic strains in simulated ice cream conditions, Journal of Applied Sciences, pp.379-382, 2008.

D. S. Horne-;-horne, Casein Interactions: Casting Light on the Black Boxes, the Structure in Dairy Products, International Dairy Journal, vol.8, issue.3, pp.171-177, 1998.

[. Horvath, Comparative analysis of CRISPR loci in lactic acid bacteria genomes, International Journal of Food Microbiology, vol.131, issue.1, pp.62-70, 2009.

[. Houzé, Viscoelastic properties of acid milk gel as affected by fat nature at low level, International Dairy Journal, vol.15, issue.10, pp.1006-1016, 2005.

[. Huang, Hyperconcentrated sweet whey, a new culture medium that enhances propionibacterium freudenreichii stress tolerance, Applied and Environmental Microbiology, vol.82, issue.15, pp.4641-4651, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01454632

[. Huc, Rheological characterisation of semi-hard cheese using lubricated squeezing flow test, International Dairy Journal, vol.36, issue.2, pp.101-109, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01173908

. Hynönen, U. Palva-;-hynönen, and A. Palva, Lactobacillus surface layer proteins: structure, function and applications, Applied Microbiology and Biotechnology, vol.97, issue.12, pp.5225-5243, 2013.

[. Iaconelli, Drying process strongly affects probiotics viability and functionalities, Journal of Biotechnology, vol.214, pp.17-26, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02292051

. [ion-titapiccolo, , 2010.

, Rennet-induced aggregation of homogenized milk: Impact of the presence of fat globules on the structure of casein gels, Dairy Science & Technology, vol.90, issue.6, pp.623-639

T. Ishikawa, Stability of a Dumbbell Micro-Swimmer, vol.10, p.33, 2019.

A. Isihara, Theory of High Polymer Solutions (The Dumbbell Model), The Journal of Chemical Physics, vol.19, issue.4, pp.397-403, 1951.

. Islam, Combined effects of selected food additives on adhesion of various foodborne pathogens onto microtiter plate and cabbage leaves, Proceedings of the 10th Egyptian Conference for Dairy Science and Technology, vol.46, pp.415-432, 2007.

[. Isolauri, A human lactobacillus strain (lactobacillus casei sp strain GG) promotes recovery from acute diarrhea in children, Pediatrics, vol.88, issue.1, pp.90-97, 1991.

[. Jaglic, Surface adhesins and exopolymers of selected foodborne pathogens, Microbiology, vol.160, pp.2561-2582, 2014.

[. Javanmard, Application of the thixotropic elasto-viscoplastic model as a structure probing technique for acid milk gel suspensions, Journal of Food Engineering, vol.222, pp.250-257, 2018.

[. Jeanson, Spatial distribution of bacterial colonies in a model cheese, Applied and Environmental Microbiology, vol.77, issue.4, pp.1493-1500, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00730167

[. Jeanson, Bacterial colonies in solid media and foods: A review on their growth and interactions with the micro-environment, Frontiers in Microbiology, vol.6, 2015.

G. B. Jeffery-;-jeffery, The motion of ellipsoidal particles immersed in a viscous fluid, Proc. R. Soc. Lond. A, vol.102, pp.161-179, 1922.

[. Jensen, Role of Lactobacillus reuteri cell and mucus-binding protein A (CmbA) in adhesion to intestinal epithelial cells and mucus in vitro, Microbiology, pp.671-681, 2014.

K. Jiang, Y. Jiang, and P. Kurath, Characteristics of the Armstrong-Frederick type plasticity models, International Journal of Plasticity, vol.12, issue.3, pp.387-415, 1996.

J. , Probiotics, prebiotics, and synbiotics for the prevention of necrotizing enterocolitis, Advances in Nutrition: An International Review Journal, vol.7, issue.5, pp.928-937, 2016.

S. Jolly, L. Stingele, and F. , Molecular organization and functionality of exopolysaccharide gene clusters in lactic acid bacteria, International Dairy Journal, vol.11, issue.9, pp.733-745, 2001.

[. Jones, InterProScan 5: genome-scale protein function classification, Bioinformatics, vol.30, issue.9, pp.1236-1240, 2014.

[. Joshi, Role of hydrodynamic shear in the cultivation of animal, plant and microbial cells, The Chemical Engineering Journal and the Biochemical Engineering Journal, vol.62, issue.2, pp.121-141, 1996.

[. Joshi, Understanding the role of calcium in functionality of part skim Mozzarella cheese, Journal of Dairy Science, vol.86, issue.6, pp.1918-1926, 2003.

N. Juge-;-juge, Microbial adhesins to gastrointestinal mucus, Trends in Microbiology, vol.20, issue.1, pp.30-39, 2012.

M. Jürgens, K. Jürgens, and C. Matz, Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria, Antonie van Leeuwenhoek, vol.81, pp.413-434, 2002.

[. Kailasapathy, Survival of lactobacillus acidophilus and bifidobacterium animalis ssp. lactis in stirred fruit yogurts, vol.41, pp.1317-1322, 2008.

[. Kailasham, Rheological consequences of wet and dry friction in a dumbbell model with hydrodynamic interactions and internal viscosity, The Journal of Chemical Physics, vol.149, issue.9, p.94903, 2018.

[. Kankainen, Comparative genomic analysis of lactobacillus rhamnosus GG reveals pili containing a human-mucus binding protein, Proceedings of the National Academy of Sciences, p.106, 2009.

[. Karimi, Viability of probiotic microorganisms in cheese during production and storage: a review, Dairy Science & Technology, vol.91, issue.3, pp.283-308, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00930609

M. Katsikogianni and Y. F. Missirlis, Concise review of mechanisms of bacterial adhesion to biomaterials and of techniques used in estimating bacteria-material interactions, Eur Cell Mater, vol.8, issue.3, 2004.

S. ;. Keaveny, E. E. Keaveny, and M. J. Shelley, Applying a second-kind boundary integral equation for surface tractions in stokes flow, Journal of Computational Physics, vol.230, issue.5, pp.2141-2159, 2011.

O. Kelly, P. Kelly, and B. Kennedy, The effect of casein/whey protein ratio and minerals on the rheology of fresh cheese gels using a model system, International Dairy Journal, vol.11, issue.4-7, pp.525-532, 2001.

K. Khalid and . Others, An overview of lactic acid bacteria, International Journal of Biosciences, vol.1, issue.3, pp.1-13, 2011.

[. Khan, Meat as a functional food with special reference to probiotic sausages, Food Research International, vol.44, issue.10, pp.3125-3133, 2011.

. Kiekens, Impact of spray-drying on the pili of Lactobacillus rhamnosus GG: Spray-drying affects functionality probiotics, Microbial Biotechnology, pp.1-7, 2019.

B. Kim, S. S. Kim, and S. Bhowmik, Survival of lactic acid bacteria during spray drying of plain yogurt, Journal of Food Science, 1990.

. Kimoto-nira, New lactic acid bacterial strains from traditional mongolian fermented milk products have altered adhesion to porcine gastric mucin depending on the carbon source: Altered adhesion activity by c-source, Animal Science Journal, vol.86, issue.3, pp.325-332, 2015.

[. Kindstedt, of Major Cheese Groups, Cheese: Chemistry, vol.2, pp.251-277, 2004.

[. Kinoshita, Cell surface Lactobacillus plantarum LA 318 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) adheres to human colonic mucin, Journal of Applied Microbiology, vol.104, issue.6, pp.1667-1674, 2008.

[. Klaenhammer, Genomic features of lactic acid bacteria effecting bioprocessing and health, FEMS Microbiology Reviews, vol.29, issue.3, pp.393-409, 2005.

H. Kleerebezem, M. Kleerebezem, and J. Hugenholtz, Metabolic pathway engineering in lactic acid bacteria, Current Opinion in Biotechnology, vol.14, issue.2, pp.232-237, 2003.

P. Klemm and M. A. Schembri, Bacterial adhesins: function and structure, International Journal of Medical Microbiology, vol.290, issue.1, pp.27-35, 2000.

. Klindt-toldam, Survival of lactobacillus acidophilus NCFM and bifidobacterium lactis HN019 encapsulated in chocolate during in vitro simulated passage of the upper gastrointestinal tract, vol.74, pp.404-410, 2016.

[. Kline, A tale of two pili: assembly and function of pili in bacteria, Trends in microbiology, vol.18, issue.5, pp.224-232, 2010.

[. Kline, Bacterial adhesins in host-microbe interactions, Cell Host & Microbe, vol.5, issue.6, pp.580-592, 2009.

[. Klu, Survival of four commercial probiotic mixtures in full fat and reduced fat peanut butter, Food Microbiology, vol.44, pp.34-40, 2014.

[. Klu, Survival of lactobacillus rhamnosus GG as influenced by storage conditions and product matrixes, Journal of Food Science, vol.77, issue.12, pp.659-663, 2012.

[. Kobayashi, . Yamamoto, H. Kobayashi, and R. Yamamoto, Tumbling motion of a single chain in shear flow: A crossover from brownian to non-brownian behavior, Physical Review E, vol.81, issue.4, 2010.

[. Kobe, B. Kajava-;-kobe, and A. V. Kajava, The leucine-rich repeat as a protein recognition motif, Current Opinion in Structural Biology, vol.11, issue.6, pp.725-732, 2001.

[. Kontopidis, The ligand-binding site of bovine beta-lactoglobulin: evidence for a function, Journal of Molecular Biology, vol.318, issue.4, pp.1043-1055, 2002.

[. Kontopidis, Invited review: beta-lactoglobulin: binding properties, structure, and function, Journal of Dairy Science, vol.87, issue.4, pp.785-796, 2004.

J. Korolczuk, Flow behaviour of low solids fresh cheeses, Journal of Dairy Research, vol.60, issue.4, pp.593-601, 1993.

, Mathematical analysis of polymer degradation with chain-end scission, Chemical Engineering Science, vol.55, issue.13, pp.2507-2513, 2000.

[. Kothari, Determination of mechanical and rheological properties of cheese by indentation, Mathematical Sciences, vol.5, issue.4, pp.35-44, 2016.

[. Kowalik, Analysis and mathematical modelling of the behaviour of escherichia coli in the mascarpone cheese during cold storage, International Journal of Food Science & Technology, vol.53, issue.6, pp.1541-1548, 2018.

O. Kravchuk and J. R. Stokes, Review of algorithms for estimating the gap error correction in narrow gap parallel plate rheology, Journal of Rheology, vol.57, issue.2, pp.365-375, 2013.

[. Kubota, Biofilm formation by lactic acid bacteria and resistance to environmental stress, Journal of Bioscience and Bioengineering, vol.106, issue.4, pp.381-386, 2008.

J. Lablée, Evolution de la théorie fromagère et utilisation de la gluconodelta-lactone, vol.61, pp.191-198, 1988.

Y. Lacroix, C. Lacroix, and S. Yildirim, Fermentation technologies for the production of probiotics with high viability and functionality, Current Opinion in Biotechnology, vol.18, issue.2, pp.176-183, 2007.

[. Lakemond, V. Vliet-;-lakemond, C. M. Van-vliet, and T. , Rheology of acid skim milk gels, pp.26-36, 2007.

. Lali?i?-petronijevi?, Viability of probiotic strains lactobacillus acidophilus NCFMand bifidobacterium lactis HN019 and their impact on sensory and rheological properties of milk and dark chocolates during storage for 180 days, Journal of Functional Foods, vol.15, pp.541-550, 2015.

[. Laloy, Influence of the fat content of cheddar cheese on retention and localization of starters, International Dairy Journal, vol.6, issue.7, pp.729-740, 1996.

[. Lamichhane, Symposium review: Structure-function relationships in cheese, Journal of Dairy Science, vol.101, issue.3, pp.2692-2709, 2018.

[. Lamothe, Influence of cheese matrix on lipid digestion in a simulated gastro-intestinal environment, Food and Function, vol.3, issue.7, pp.724-731, 2012.

[. Lane, Methodologies for screening of bacteria-carbohydrate interactions: Antiadhesive milk oligosaccharides as a case study, Journal of Microbiological Methods, vol.90, issue.1, pp.53-59, 2012.

[. Lange, Effect of high shear stress on microbial viability, Journal of Chemical Technology & Biotechnology, vol.76, issue.5, pp.501-505, 2001.
URL : https://hal.archives-ouvertes.fr/hal-02143250

[. Larsen, The effect of calcium ions on adhesion and competitive exclusion of lactobacillus ssp. and e. coli o138, International Journal of Food Microbiology, vol.114, issue.1, pp.113-119, 2007.

R. G. Larson, Constitutive equations for thixotropic fluids, Journal of Rheology, vol.59, issue.3, pp.595-611, 2015.

P. Lavermicocca, Highlights on new food research. Digestive and Liver Disease, vol.38, pp.295-299, 2006.

[. Lavermicocca, Study of adhesion and survival of lactobacilli and bifidobacteria on table olives with the aim of formulating a new probiotic food, Applied and Environmental Microbiology, vol.71, issue.8, pp.4233-4240, 2005.

[. Le, Unraveling the role of surface mucus-binding protein and pili in muco-adhesion of Lactococcus lactis, PloS One, vol.8, issue.11, p.79850, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01204286

[. Le, Effect of washing conditions on the recovery of milk fat globule membrane proteins during the isolation of milk fat globule membrane from milk, Journal of Dairy Science, vol.92, issue.8, pp.3592-3603, 2009.

[. Lebeer, Functional analysis of lactobacillus rhamnosus GG pili in relation to adhesion and immunomodulatory interactions with intestinal epithelial cells, Applied and Environmental Microbiology, vol.78, issue.1, pp.185-193, 2012.

[. Lebeer, Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens, Nature Reviews Microbiology, vol.8, issue.3, pp.171-184, 2010.

[. Lebeer, Genes and molecules of lactobacilli supporting probiotic action, Microbiology and Molecular Biology Reviews, vol.72, issue.4, pp.728-764, 2008.

[. Lebeer, Identification of a gene cluster for the biosynthesis of a long, galactose-rich exopolysaccharide in lactobacillus rhamnosus GG and functional analysis of the priming glycosyltransferase, Applied and Environmental Microbiology, vol.75, issue.11, pp.3554-3563, 2009.

[. Lechardeur, Discovery of intracellular heme-binding protein HrtR, which controls heme efflux by the conserved HrtB-HrtA transporter in lactococcus lactis, Journal of Biological Chemistry, vol.287, issue.7, pp.4752-4758, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00324331

[. Lecuyer, Shear stress increases the residence time of adhesion of pseudomonas aeruginosa, Biophysical Journal, vol.100, issue.2, pp.341-350, 2011.

[. Lee, ;. Lim, . Lee, and H. Lim, New device for continuously monitoring the optical density of concentrated microbial cultures, Biotechnology and Bioengineering, vol.22, issue.3, pp.639-642, 1980.

[. Lee, Quantitative approach in the study of adhesion of lactic acid bacteria to intestinal cells and their competition with enterobacteria, Applied and Environmental Microbiology, vol.66, issue.9, pp.3692-3697, 2000.

Y. K. Lee and S. Salminen, Handbook of Probiotics and Prebiotics, 2009.

. Lewis, Mass and density measurements of live and dead gram-negative and gram-positive bacterial populations, Applied and Environmental Microbiology, vol.80, issue.12, pp.3622-3631, 2014.

[. Li, Signalling pathways for transactivation by dexmedetomidine of epidermal growth factor receptors in astrocytes and its paracrine effect on neurons, British Journal of Pharmacology, vol.154, issue.1, pp.191-203, 2008.

S. Q. Liu-;-liu, Practical implications of lactate and pyruvate metabolism by lactic acid bacteria in food and beverage fermentations, International journal of food microbiology, vol.83, issue.2, pp.115-131, 2003.

[. Liu, Rheological and mechanical behavior of milk protein composite gel for extrusion-based 3d food printing, LWT, vol.102, pp.338-346, 2019.

Y. D. Livney, Milk proteins as vehicles for bioactives, Current Opinion in Colloid & Interface Science, vol.15, issue.1, pp.73-83, 2010.

C. Lopez, Focus on the supramolecular structure of milk fat in dairy products, Reproduction Nutrition Development, vol.45, issue.4, pp.497-511, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00900572

[. Lopez, Lipolysis during ripening of emmental cheese considering organization of fat and preferential localization of bacteria, Journal of Agricultural and Food Chemistry, vol.54, issue.16, pp.5855-5867, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01453922

. Lourens-hattingh, ;. Viljoen, A. Lourens-hattingh, and B. C. Viljoen, Yogurt as probiotic carrier food, International Dairy Journal, vol.11, issue.1, pp.1-17, 2001.

[. Lowe, Rheological properties of fine-stranded whey protein isolate gels, Food Hydrocolloids, vol.17, issue.4, pp.515-522, 2003.

[. Lu, Nanoscale pulling of type IV pili reveals their flexibility and adhesion to surfaces over extended lengths of the pili, Biophysical Journal, vol.108, issue.12, pp.2865-2875, 2015.

[. Lucas, Probiotic cell counts and acidification in fermented milks supplemented with milk protein hydrolysates, International Dairy Journal, vol.14, issue.1, pp.47-53, 2004.

[. Lucey, Invited review: Perspectives on the basis of the rheology and texture properties of cheese, Journal of Dairy Science, vol.86, issue.9, pp.2725-2743, 2003.

[. Luo, Effects of size and stability of native fat globules on the formation of milk gel induced by rennet, Journal of Food Science, vol.82, issue.3, pp.670-678, 2017.

W. Luo and Z. Yin, Global existence and well-posedness for the FENE dumbbell model of polymeric flows, Nonlinear Analysis: Real World Applications, vol.37, pp.457-488, 2017.

. Lupien-meilleur, Viability of probiotic bacteria in a maple sap beverage during refrigerated storage, LWT -Food Science and Technology, vol.74, pp.160-167, 2016.

[. Ly, Diversity of the surface properties of Lactococci and consequences on adhesion to food components, Colloids and Surfaces. B, Biointerfaces, vol.52, issue.2, pp.149-153, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00368197

[. Mackenzie, Strain-specific diversity of mucusbinding proteins in the adhesion and aggregation properties of Lactobacillus reuteri, pp.3368-3378, 2010.

[. Mackenzie, Crystal structure of a mucus-binding protein repeat reveals an unexpected functional immunoglobulin binding activity, The Journal of Biological Chemistry, vol.284, issue.47, pp.32444-32453, 2009.

. Macías-rodríguez, Lactobacillus fermentum BCS87 expresses mucus-and mucin-binding proteins on the cell surface, Journal of Applied Microbiology, vol.107, issue.6, pp.1866-1874, 2009.

[. Madureira, Protective effect of whey cheese matrix on probiotic strains exposed to simulated gastrointestinal conditions, Food Research International, vol.44, issue.1, pp.465-470, 2011.

[. Madureira, Survival of probiotic bacteria in a whey cheese vector submitted to environmental conditions prevailing in the gastrointestinal tract, International Dairy Journal, vol.15, issue.6, pp.921-927, 2005.

. Maffettone, P. L. Marrucci-;-maffettone, and G. Marrucci, The nematic dumbbell model, Journal of Rheology, vol.36, issue.8, pp.1547-1561, 1992.

[. Majorek, Structural and immunologic characterization of bovine, horse, and rabbit serum albumins, Molecular Immunology, vol.52, issue.3-4, pp.174-182, 2012.

[. Makarova, Comparative genomics of the lactic acid bacteria, vol.103, pp.15611-15616, 2006.

, A dual-acidification process for the manufacture of direct-acidified Cottage cheese, International Journal of Dairy Technology, vol.66, issue.4, pp.552-561, 2013.

[. Makinen, Science and technology for the mastership of probiotic applications in food products, Journal of Biotechnology, vol.162, issue.4, pp.356-365, 2012.

[. Mandlik, Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development, Trends in microbiology, vol.16, issue.1, pp.33-40, 2008.

N. V. Mantzaris, Transient and asymptotic behaviour of the binary breakage problem, Journal of Physics A Mathematical General, vol.38, pp.5111-5132, 2005.

[. Mao, Rupture of polymers by chain scission, Extreme Mechanics Letters, vol.13, pp.17-24, 2017.

[. Maresso, A. W. Schneewind-;-maresso, and O. Schneewind, Sortase as a target of anti-infective therapy, Pharmacological Reviews, vol.60, issue.1, pp.128-141, 2008.

[. Marshall, Mechanism of the Initial Events in the Sorption of Marine Bacteria to Surfaces. Microbiology, vol.68, pp.337-348, 1971.

. Martinez-monzo, Mechanical and structural changes in apple (var. granny smith) due to vacuum impregnation with cryoprotectants, Journal of Food Science, vol.63, issue.3, pp.499-503, 1998.

L. ;. Martins, B. M. Martins, and J. C. Locke, Microbial individuality: how single-cell heterogeneity enables population level strategies, Current Opinion in Microbiology, vol.24, pp.104-112, 2015.

. Martins, Products of vegetable origin: A new alternative for the consumption of probiotic bacteria, Food Research International, vol.51, issue.2, pp.764-770, 2013.

N. Masmoudi, Well-posedness for the FENE dumbbell model of polymeric flows, Communications on Pure and Applied Mathematics, vol.61, issue.12, pp.1685-1714, 2008.

. Massaguer-roig, Characterization of thixotropic behavior of soft cheeses, Journal of Food Science, vol.49, issue.3, pp.668-670, 1984.

I. H. Mather, A Review and Proposed Nomenclature for Major Proteins of the Milk-Fat Globule Membrane1,2, Journal of Dairy Science, vol.83, issue.2, pp.203-247, 2000.

D. J. Mcclements, Enhancing nutraceutical bioavailability through food matrix design. Current Opinion in Food Science, vol.4, pp.1-6, 2015.

[. Mccrea, The serine-aspartate repeat (sdr) protein family in staphylococcus epidermidis, Microbiology, vol.146, issue.7, pp.1535-1546, 2000.

E. Mcculloch, Experimental and Finite Element Modeling of Ultrasonic Cutting of Food, 2008.

O. Mcmahon, D. Mcmahon, and C. Oberg, Cheese: Pasta-filata Cheeses: Low-Moisture Part-Skim Mozzarella (Pizza Cheese), Encyclopedia of Dairy Sciences, vol.1, pp.737-744, 2011.

O. Mcmahon, D. J. Mcmahon, and B. S. Oommen, Supramolecular structure of the casein micelle, Journal of Dairy Science, vol.91, issue.5, pp.1709-1721, 2008.

[. Mcsweeney, O. Mcsweeney, and P. L. O'mahony, Advanced dairy chemistry, Proteins: Applied Aspects, vol.1, 2016.

[. Mende, Addition of purified exopolysaccharide isolates from S. thermophilus to milk and their impact on the rheology of acid gels, Food Hydrocolloids, vol.32, issue.1, pp.178-185, 2013.

[. Meng, Anhydrobiotics: The challenges of drying probiotic cultures, Food Chemistry, vol.106, issue.4, pp.1406-1416, 2008.

[. Mercier, Effects of a muramidase on a mixed bacterial community, FEMS Microbiology Letters, vol.187, issue.1, pp.47-52, 2000.

. Mewis, J. Wagner-;-mewis, and N. J. Wagner, Thixotropy. Advances in Colloid and Interface Science, pp.214-227, 2009.

[. Meyrand, Surface proteome analysis of a natural isolate of Lactococcus lactis reveals the presence of pili able to bind human intestinal epithelial cells, Molecular & cellular proteomics: MCP, vol.12, issue.12, pp.3935-3947, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00859731

[. Michalski, Native vs. damaged milk fat globules: membrane properties affect the viscoelasticity of milk gels, Journal of Dairy Science, vol.85, issue.10, pp.2451-2461, 2002.

[. Miller, The mechanical properties of e. coli type 1 pili measured by atomic force microscopy techniques, Biophysical Journal, vol.91, issue.10, pp.3848-3856, 2006.

[. Minekus, A standardised static in vitro digestion method suitable for food -an international consensus, Food and Function, vol.5, issue.6, pp.1113-1124, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01195466

W. H. Mitchell and S. E. Spagnolie, A generalized traction integral equation for stokes flow, with applications to near-wall particle mobility and viscous erosion, Journal of Computational Physics, vol.333, pp.462-482, 2017.

[. Miyoshi, A mucus adhesion promoting protein, MapA, mediates the adhesion of Lactobacillus reuteri to Caco-2 human intestinal epithelial cells, Biotechnology, and Biochemistry, vol.70, issue.7, pp.1622-1628, 2006.

[. Mizuno, R. Lucey-;-mizuno, and J. A. Lucey, Effects of two types of emulsifying salts on the functionality of nonfat pasta filata cheese, Journal of Dairy Science, vol.88, issue.10, pp.3411-3425, 2005.

M. Mohammadi, R. Mohammadi, and A. M. Mortazavian, Review article: Technological aspects of prebiotics in probiotic fermented milks, Food Reviews International, vol.27, issue.2, pp.192-212, 2011.

[. Monaco, Crystal structure of the trigonal form of bovine beta-lactoglobulin and of its complex with retinol at 2.5 a resolution, Journal of Molecular Biology, vol.197, issue.4, pp.695-706, 1987.

. Monahan, Division site positioning in bacteria: one size does not fit all, Frontiers in Microbiology, vol.5, p.19, 2014.

. Montroll, E. W. Simha-;-montroll, and R. Simha, Theory of Depolymerization of Long Chain Molecules, The Journal of Chemical Physics, vol.8, issue.9, pp.721-726, 1940.

L. Morelli-;-morelli, In vitro assessment of probiotic bacteria: From survival to functionality, International Dairy Journal, vol.17, issue.11, pp.1278-1283, 2007.

C. Morra, M. Morra, and C. Cassinelli, Staphylococcus epidermidis adhesion to films deposited from hydroxyethylmethacrylate plasma, Journal of Biomedical Materials Research, vol.31, issue.2, pp.149-155, 1996.

C. Morra, M. Morra, and C. Cassinelli, Bacterial adhesion to polymer surfaces: A critical review of surface thermodynamic approaches, Journal of Biomaterials Science, vol.9, issue.1, pp.55-74, 1998.

. Mortazavian, Effects of dry matter standardization order on biochemical and microbiological characteristics of freshly made probiotic doogh (iranian fermented milk drink), Italian Journal of Food Science, vol.22, issue.1, pp.98-104, 2010.

. Mortazavian, Delivery of probiotic microorganisms into gastrointestinal tract by food products, 2012.

[. Mukai, Inhibition of binding of Helicobacter pylori to the glycolipid receptors by probiotic Lactobacillus reuteri, FEMS immunology and medical microbiology, vol.32, issue.2, pp.105-110, 2002.

E. B. Muliawan and S. G. Hatzikiriakos, Rheology of mozzarella cheese, International Dairy Journal, vol.17, issue.9, pp.1063-1072, 2007.

[. Muller, Reconstitution conditions for dried probiotic powders represent a critical step in determining cell viability, Journal of Applied Microbiology, vol.108, issue.4, pp.1369-1379, 2010.

[. Munoz, Release LTPs104 of the all-species living tree, Systematic and Applied Microbiology, vol.34, issue.3, pp.169-170, 2011.

. Muthukumarappan, K. Swamy-;-muthukumarappan, and G. J. Swamy, Chapter 10 -rheology, microstructure, and functionality of cheese, Advances in Food Rheology and Its Applications, pp.245-276, 2017.

[. Muzzio, Enhanced antiadhesive properties of chitosan/hyaluronic acid polyelectrolyte multilayers driven by thermal annealing: Low adherence for mammalian cells and selective decrease in adhesion for gram-positive bacteria, Materials Science and Engineering: C, vol.80, pp.677-687, 2017.

. Muñoz-provencio, Adhesion properties of lactobacillus casei strains to resected intestinal fragments and components of the extracellular matrix, Archives of Microbiology, vol.191, issue.2, pp.153-161, 2009.

[. Möller, Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces, New Journal of Physics, vol.15, issue.12, p.125016, 2013.

[. Møller, Physical sample structure as predictive factor in growth modeling of Listeria innocua in a white cheese model system, Food Microbiology, vol.36, issue.1, pp.90-102, 2013.

[. Nagara, , 2017.

, Microscale spatial analysis provides evidence for adhesive monopolization of dietary nutrients by specific intestinal bacteria, PLOS ONE, vol.12, issue.4, p.175497

S. Navarre, W. W. Navarre, and O. Schneewind, Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope, Microbiology and molecular biology reviews, vol.63, issue.1, pp.174-229, 1999.

[. Nghe, Flow-induced polymer degradation probed by a high throughput microfluidic set-up, Journal of Non-Newtonian Fluid Mechanics, vol.165, issue.7-8, pp.313-322, 2010.

[. Niki, Viscoelastic properties of acid-induced milk gel at different gelation temperatures, Hydrocolloids, pp.447-451, 2000.

. Ningtyas, Effect of homogenisation of cheese milk and high-shear mixing of the curd during cream cheese manufacture, International Journal of Dairy Technology, vol.71, issue.2, pp.417-431, 2018.

[. Nishiyama, Identification and characterization of sulfated carbohydrate-binding protein from Lactobacillus reuteri, PloS One, vol.8, issue.12, p.83703, 2013.

[. Nishiyama, Adhesion Properties of Lactic Acid Bacteria on, Intestinal Mucin. Microorganisms, issue.3, p.4, 2016.

. Notermans, Contribution of surface attachment to the establishment of micro-organisms in food processing plants: A review, Biofouling, vol.5, issue.1, pp.21-36, 1991.

. Nualkaekul, Survival of freeze dried lactobacillus plantarum in instant fruit powders and reconstituted fruit juices, Food Research International, vol.48, issue.2, pp.627-633, 2012.

[. Oberg, Microstructure of mozzarella cheese during manufacture, Food structure, vol.12, issue.2, p.12, 1993.

;. Connell and D. Connell, Dock, lock and latch, Nature Reviews Microbiology, vol.1, issue.3, p.171, 2003.

[. Okochi, Screening of peptides associated with adhesion and aggregation of lactobacillus rhamnosus GG in vitro, Biochemical Engineering Journal, vol.128, pp.178-185, 2017.

[. Omar, Texture evaluation of french acid-type fresh cheeses, Journal of Texture Studies, vol.26, issue.3, pp.325-338, 1995.

S. Ong, L. Ong, and N. P. Shah, Probiotic cheddar cheese: Influence of ripening temperatures on survival of probiotic microorganisms, cheese composition and organic acid profiles, LWT -Food Science and Technology, vol.42, issue.7, pp.1260-1268, 2009.

[. Ong, Adhesion forces between e. coli bacteria and biomaterial surfaces, vol.15, pp.2719-2725, 1999.

S. Onogi, Proceedings Of The Fifth International Congress On Rheology, vol.4, 1970.

[. Ouwehand, Assessment of adhesion properties of novel probiotic strains to human intestinal mucus, International Journal of Food Microbiology, vol.64, issue.1, pp.119-126, 2001.

W. Pabst and E. Gregorová, Characterization of particles and particle systems, 2007.

[. Palumbo, d-Alanyl Ester Depletion of Teichoic Acids in Lactobacillus plantarum Results in a Major Modification of Lipoteichoic Acid Composition and Cell Wall Perforations at the Septum Mediated by the Acm2 Autolysin, Journal of Bacteriology, vol.188, issue.10, pp.3709-3715, 2006.

[. Pandey, Probiotics, prebiotics and synbiotics-a review, Journal of Food Science and Technology, vol.52, issue.12, pp.7577-7587, 2015.

K. I. [pappelbaum, Ultralarge von willebrand factor fibers mediate luminal staphylococcus aureus adhesion to an intact endothelial cell layer under shear stress, Circulation, vol.128, issue.1, pp.50-59, 2013.

C. [pasqualin, Application of probiotic delivery systems in meat products, Trends in Food Science & Technology, vol.46, issue.1, pp.120-131, 2015.

. Patel, Cloning, expression and characterization of a mucin-binding GAPDH from Lactobacillus acidophilus, International Journal of Biological Macromolecules, vol.91, pp.338-346, 2016.

[. Patrício, Living bacteria rheology: Population growth, aggregation patterns, and collective behavior under different shear flows, Physical Review E, vol.90, issue.2, p.22720, 2014.

[. Patton, Use of a spectrophotometric bioassay for determination of microbial sensitivity to manuka honey, Journal of Microbiological Methods, vol.64, issue.1, pp.84-95, 2006.

[. Paturej, Polymer chain scission at constant tension -An example of force-induced collective behaviour, Europhysics Letters), vol.94, issue.4, p.48003, 2011.

[. Paéz, Effect of heat treatment and spray drying on lactobacilli viability and resistance to simulated gastrointestinal digestion, Food Research International, vol.48, issue.2, pp.748-754, 2012.

[. Pedersen, Aerobic respiration metabolism in lactic acid bacteria and uses in biotechnology, Annual Review of Food Science and Technology, vol.3, pp.37-58, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01053136

[. Persat, The mechanical world of bacteria, Cell, vol.161, issue.5, pp.988-997, 2015.

E. Piacentini, New method to study bacterial adhesion to meat, Encyclopedia of Membranes, vol.55, pp.1531-1536, 1989.

[. Pike, Crystal structures of guineapig, goat and bovine alpha-lactalbumin highlight the enhanced conformational flexibility of regions that are significant for its action in lactose synthase, Structure, vol.4, issue.6, pp.691-703, 1996.

C. Cerdá, J. Cossart, and P. , Bacterial adhesion and entry into host cells, Cell, vol.124, issue.4, pp.715-727, 2006.

[. Pokusaeva, Carbohydrate metabolism in bifidobacteria, Genes & Nutrition, vol.6, issue.3, pp.285-306, 2011.

[. Ponnuraj, A "dock, lock, and latch" structural model for a staphylococcal adhesin binding to fibrinogen, Cell, vol.115, issue.2, pp.217-228, 2003.

R. D. Pontefract, Bacterial adherence: Its consequences in food processing, Canadian Institute of Food Science and Technology Journal, vol.24, issue.3, pp.113-117, 1991.

[. Poortinga, Electric double layer interactions in bacterial adhesion to surfaces, Surface Science Reports, vol.47, issue.1, pp.1-32, 2002.

[. Posch, Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community, Aquatic Microbial Ecology, vol.18, pp.235-246, 1999.

. Possemiers, Bacteria and chocolate: A successful combination for probiotic delivery, International Journal of Food Microbiology, vol.141, issue.1, pp.97-103, 2010.

B. Pot, The taxonomy of lactic acid bacteria, Bactéries lactiques: de la génétique aux ferments, Collections Sciences et Techniques Agroalimentaires, pp.1-152, 2007.

G. Corrieu, . Luquet, and . François-marie,

[. Pouzot, Strain hardening and fracture of heat-set fractal globular protein gels, Journal of Colloid and Interface Science, vol.293, issue.2, pp.376-383, 2006.

[. Pretzer, Biodiversity-Based Identification and Functional Characterization of the Mannose-Specific Adhesin of Lactobacillus plantarum, Journal of Bacteriology, vol.187, issue.17, pp.6128-6136, 2005.

E. P. Previc, Biochemical determination of bacterial morphology and the geometry of cell division, Journal of Theoretical Biology, vol.27, issue.3, pp.471-497, 1970.

T. Proft and E. N. Baker, Pili in gram-negative and grampositive bacteria -structure, assembly and their role in disease, Cellular and Molecular Life Sciences, vol.66, issue.4, p.613, 2009.

[. Pönisch, Multiscale modeling of bacterial colonies: how pili mediate the dynamics of single cells and cellular aggregates, New Journal of Physics, vol.19, issue.1, p.15003, 2017.

O. Qi, P. X. Qi, and C. I. Onwulata, Physical properties, molecular structures, and protein quality of texturized whey protein isolate: Effect of extrusion moisture content, Journal of Dairy Science, vol.94, issue.5, pp.2231-2244, 2011.

O. Qi, P. X. Qi, and C. I. Onwulata, Physical Properties, Molecular Structures, and Protein Quality of Texturized Whey Protein Isolate: Effect of Extrusion Temperature, Journal of Agricultural and Food Chemistry, vol.59, issue.9, pp.4668-4675, 2011.

D. Quemada, Rheological modelling of complex fluids: II. Shear thickening behavior due to shear induced flocculation, The European Physical Journal Applied Physics, vol.2, issue.2, pp.175-181, 1998.

[. Quinto, Probiotic lactic acid bacteria: A review, Food and Nutrition Sciences, issue.18, pp.1765-1775, 2014.

. Quirynen, M. Bollen-;-quirynen, and C. M. Bollen, The influence of surface roughness and surface-free energy on supra-and subgingival plaque formation in man. A review of the literature, Journal of Clinical Periodontology, vol.22, issue.1, pp.1-14, 1995.

. Radziwill-bienkowska, Adhesion of the genome-sequenced lactococcus lactis subsp. cremoris IBB477 strain is mediated by specific molecular determinants, Applied Microbiology and Biotechnology, vol.100, issue.22, pp.9605-9617, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01607441

[. Ranadheera, In vitro analysis of gastrointestinal tolerance and intestinal cell adhesion of probiotics in goat's milk ice cream and yogurt, Food Research International, vol.49, issue.2, pp.619-625, 2012.

[. Ranadheera, Importance of food in probiotic efficacy, Food Research International, vol.43, issue.1, pp.1-7, 2010.

. Rangel, Observation of bacterial type i pili extension and contraction under fluid flow, PLOS ONE, vol.8, issue.6, p.65563, 2013.

[. Rathore, Production of potentially probiotic beverages using single and mixed cereal substrates fermented with lactic acid bacteria cultures, Food Microbiology, vol.30, issue.1, pp.239-244, 2012.

A. Rawle, Basic Principles of Particle Size Analysis, Surface Coatings International Part A: Coatings Journal, vol.86, issue.2, pp.58-65, 2003.

N. T. Reichmann and A. Gründling, Location, synthesis and function of glycolipids and polyglycerolphosphate lipoteichoic acid in Gram-positive bacteria of the phylum Firmicutes, FEMS microbiology letters, vol.319, issue.2, pp.97-105, 2011.

. [reunanen, Characterization of the SpaCBA pilus fibers in the probiotic lactobacillus rhamnosus GG, Appl. Environ. Microbiol, vol.78, issue.7, pp.2337-2344, 2012.

P. Riccio, The proteins of the milk fat globule membrane in the balance, Trends in Food Science & Technology, vol.15, pp.458-461, 2004.

[. Rintahaka, Phenotypical analysis of the Lactobacillus rhamnosus GG fimbrial spaFED operon: surface expression and functional characterization of recombinant SpaFED pili in Lactococcus lactis, PloS One, vol.9, issue.11, p.113922, 2014.

. Riveros, Spray drying of a vaginal probiotic strain of lactobacillus acidophilus, Drying Technology, vol.27, issue.1, pp.123-132, 2009.

S. Robert, F. Robert, and P. Sherman, The influence of surface friction on the calculation of stress relaxation parameters for processed cheese, Rheologica Acta, vol.27, issue.2, pp.212-215, 1988.

S. Rodgers-;-rodgers, Incorporation of probiotic cultures in foodservice products: an exploratory study, Journal of Foodservice, vol.18, issue.3, pp.108-118, 2007.

[. Rohm, Gelation of cross-linked casein under small and large shear strain, Journal of Texture Studies, vol.45, issue.2, pp.130-137, 2014.

[. Romeih, The influence of fat globule membrane material on the microstructure of low-fat cheddar cheese, International Dairy Journal, vol.26, issue.1, pp.66-72, 2012.

S. Roos and H. Jonsson, A high-molecular-mass cell-surface protein from lactobacillus reuteri 1063 adheres to mucus components, Microbiology, vol.148, pp.433-442, 2002.

D. ;. Rosenberg, M. Rosenberg, and R. J. Doyle, Microbial Cell-Surface Hydrophobicity, 1990.

[. Rosenberger, Surface growth in rod-shaped bacteria, Journal of Theoretical Biology, vol.73, issue.4, pp.711-721, 1978.

[. Rosendale, High-throughput microbial bioassays to screen potential new zealand functional food ingredients intended to manage the growth of probiotic and pathogenic gut bacteria, International Journal of Food Science & Technology, vol.43, issue.12, pp.2257-2267, 2008.

D. B. Roszak and R. R. Colwell, Survival strategies of bacteria in the natural environment, Microbiological Reviews, vol.51, issue.3, pp.365-379, 1987.

. Ruas-madiedo, An overview of the functionality of exopolysaccharides produced by lactic acid bacteria, International Dairy Journal, vol.12, issue.2, pp.163-171, 2002.

D. Russell, J. B. Russell, and F. Diez-gonzalez, The effects of fermentation acids on bacterial growth, Advances in Microbial Physiology, vol.39, pp.205-234, 1997.

[. Russo, Fresh-cut pineapple as a new carrier of probiotic lactic acid bacteria, BioMed Research International, p.309183, 2014.

[. Russo, Probiotic lactic acid bacteria for the production of multifunctional fresh-cut cantaloupe, Food Research International, vol.77, pp.762-772, 2015.

V. Rutter, P. R. Rutter, and B. Vincent, Physicochemical Interactions of the Substratum, Microorganisms, and the Fluid Phase, Life Sciences Research Reports, pp.21-38, 1984.

[. Rößle, Evaluation of fresh-cut apple slices enriched with probiotic bacteria, Innovative Food Science & Emerging Technologies, vol.11, issue.1, pp.203-209, 2010.

[. Saarela, Stability and functionality of freeze-dried probiotic bifidobacterium cells during storage in juice and milk, International Dairy Journal, vol.16, issue.12, pp.1477-1482, 2006.

[. Saarela, Fibres as carriers for lactobacillus rhamnosus during freeze-drying and storage in apple juice and chocolate-coated breakfast cereals, International Journal of Food Microbiology, vol.112, issue.2, pp.171-178, 2006.

B. Sachdeva, S. Sachdeva, and W. Buchheim, Recovery of phospholipids from buttermilk using membrane processing. Recovery of phospholipids from buttermilk using membrane processing, vol.49, pp.47-68, 1997.

[. Salaün, Buffering capacity of dairy products, International Dairy Journal, vol.15, issue.2, pp.95-109, 2005.

[. Samaey, A numerical closure approach for kinetic models of polymeric fluids: Exploring closure relations for FENE dumbbells, Computers & Fluids, vol.43, issue.1, pp.119-133, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00654570

. Sanders, Effects of genetic, processing, or product formulation changes on efficacy and safety of probiotics, Annals of the New York Academy of Sciences, vol.1309, issue.1, pp.1-18, 2014.

M. Sanders, M. E. Sanders, and M. L. Marco, Food formats for effective delivery of probiotics, Annual Review of Food Science and Technology, vol.1, issue.1, pp.65-85, 2010.

[. Santhanalakshmi, J. Balaji-;-santhanalakshmi, and S. Balaji, Binding studies of crystal violet on proteins, Colloids and Surfaces A: Physicochemical and Engineering Aspects, vol.186, issue.3, pp.173-177, 2001.

[. Santivarangkna, Alternative drying processes for the industrial preservation of lactic acid starter cultures, Biotechnology Progress, vol.23, issue.2, pp.302-315, 2007.

[. Santivarangkna, Inactivation mechanisms of lactic acid starter cultures preserved by drying processes, Journal of Applied Microbiology, vol.105, issue.1, pp.1-13, 2008.

[. Sato, Multiscale Simulation of Polymer Melt Spinning by Using the Dumbbell Model, Nihon Reoroji Gakkaishi, vol.44, issue.5, pp.265-280, 2017.

[. Saxelin, 1 -introduction: classifying functional dairy products, Functional Dairy Products, pp.1-16, 2003.

[. Saxelin, Persistence of probiotic strains in the gastrointestinal tract when administered as capsules, yoghurt, or cheese, International Journal of Food Microbiology, vol.144, issue.2, pp.293-300, 2010.

J. D. Schieber, A Hookean dumbbell model with Basset forces for dilute polymer solutions, The Journal of Chemical Physics, vol.94, issue.11, pp.7526-7533, 1991.

J. D. Schieber, Internal viscosity dumbbell model with a Gaussian approximation, Journal of Rheology, vol.37, issue.6, pp.1003-1027, 1993.

D. G. Schmidt, Association of caseins and casein micelle structure. Developments in dairy chemistry, 1982.

O. Schneewind and D. Missiakas, Lipoteichoic Acids, Phosphate-Containing Polymers in the Envelope of Gram-Positive Bacteria, Journal of Bacteriology, vol.196, issue.6, pp.1133-1142, 2014.

O. Schneewind and D. Missiakas, Sec-secretion and sortase-mediated anchoring of proteins in gram-positive bacteria, Biochimica Et Biophysica Acta, vol.1843, issue.8, pp.1687-1697, 2014.

[. Scholler, Use of cancerspecific yeast-secreted in vivo biotinylated recombinant antibodies for serum biomarker discovery, Journal of Translational Medicine, vol.6, p.41, 2008.

J. R. Scott and D. Zähner, Pili with strong attachments: Gram-positive bacteria do it differently, Molecular Microbiology, vol.62, issue.2, pp.320-330, 2006.

L. Segers, M. E. Segers, and S. Lebeer, Towards a better understanding of lactobacillus rhamnosus GG -host interactions, Microbial Cell Factories, vol.13, issue.1, p.7, 2014.

A. L. Servin and M. Coconnier, Adhesion of probiotic strains to the intestinal mucosa and interaction with pathogens, Best Practice & Research Clinical Gastroenterology, vol.17, issue.5, pp.741-754, 2003.

[. Sharma, Yield and Curd Characteristics of Cottage Cheese Made by the Culture and Direct-Acid-Set Methods, Journal of Food Protection, vol.43, issue.6, pp.441-446, 1980.

[. Sharma, Shear work induced changes in the viscoelastic properties of model mozzarella cheese, International Dairy Journal, vol.56, pp.108-118, 2016.

[. Sharma, Effect of shear work input on steady shear rheology and melt functionality of model mozzarella cheeses, Food Hydrocolloids, vol.54, pp.266-277, 2016.

[. Sharma, Strain hardening and anisotropy in tensile fracture properties of sheared model mozzarella cheeses, Journal of Dairy Science, vol.101, issue.1, pp.123-134, 2018.

[. Sharma, Changes in creep behavior and microstructure of model mozzarella cheese during working, vol.83, pp.184-192, 2017.

. Sharma, R. Sharma, and B. J. Cherayil, Work fluctuations in an elastic dumbbell model of polymers in planar elongational flow, Physical Review E, vol.83, issue.4, p.41805, 2011.

[. Sharp, Comparative evaluation of yogurt and low-fat cheddar cheese as delivery media for probiotic lactobacillus casei, Journal of Food Science, vol.73, issue.7, pp.375-377, 2008.

[. Sheehan, Assessing the acid tolerance and the technological robustness of probiotic cultures for fortification in fruit juices, Innovative Food Science & Emerging Technologies, vol.8, issue.2, pp.279-284, 2007.

[. Shikano, Changes of traits in a bacterial population associated with protozoal predation, Microbial Ecology, vol.20, issue.1, pp.75-84, 1990.

[. Shimaoka, LOX-1 supports adhesion of gram-positive and gramnegative bacteria, The Journal of Immunology, vol.166, issue.8, pp.5108-5114, 2001.

A. B. Shori, The potential applications of probiotics on dairy and nondairy foods focusing on viability during storage. Biocatalysis and Agricultural Biotechnology, vol.4, pp.423-431, 2015.

A. B. Shori, Influence of food matrix on the viability of probiotic bacteria: A review based on dairy and non-dairy beverages, Food Bioscience, vol.13, pp.1-8, 2016.

. Sieuwerts, Unraveling microbial interactions in food fermentations: from classical to genomics approaches, Applied and Environmental Microbiology, vol.74, issue.16, p.4997, 2008.

[. Signoretto, Functional foods and strategies contrasting bacterial adhesion, Current Opinion in Biotechnology, vol.23, issue.2, pp.160-167, 2012.

[. Singh, Aspects of food structures in the digestive tract, Current Opinion in Food Science, vol.3, pp.85-93, 2015.

T. Sjöstrand, Status of fragmentation models, International Journal of Modern Physics A, vol.03, issue.04, pp.751-823, 1988.

. Sleytr, U. B. Beveridge-;-sleytr, and T. J. Beveridge, Bacterial S-layers, Trends in Microbiology, vol.7, issue.6, pp.253-260, 1999.

D. A. Smith, Direct Tests of Muscle Cross-Bridge Theories: Predictions of a Brownian Dumbbell Model for Position-Dependent Cross-Bridge Lifetimes and Step Sizes with an Optically Trapped Actin Filament, Biophysical Journal, vol.75, issue.6, pp.2996-3007, 1998.

[. Smithers, New Opportunities from the Isolation and Utilization of Whey Proteins, Journal of Dairy Science, vol.79, issue.8, pp.1454-1459, 1996.

Y. Sonomoto, K. Sonomoto, and A. Yokota, Lactic Acid Bacteria and Bifidobacteria: Current Progress in Advanced Research, 2011.

[. Stack, Association of beta-glucan endogenous production with increased stress tolerance of intestinal lactobacilli, Applied and Environmental Microbiology, vol.76, issue.2, pp.500-507, 2010.

E. Stackebrandt and M. Teuber, Molecular taxonomy and phylogenetic position of lactic acid bacteria, Biochimie, vol.70, issue.3, pp.317-324, 1988.

[. Stadler, Rheological characterization in shear of a model dumbbell polymer concentrated solution, Rheologica Acta, vol.50, issue.5, p.491, 2011.

M. Steinitz, Quantitation of the blocking effect of tween 20 and bovine serum albumin in ELISA microwells, Analytical Biochemistry, vol.282, issue.2, pp.232-238, 2000.

. Stickel, A constitutive model for microstructure and total stress in particulate suspensions, Journal of Rheology, vol.50, issue.4, pp.379-413, 2006.

M. E. Stiles and W. H. Holzapfel, Lactic acid bacteria of foods and their current taxonomy, International Journal of Food Microbiology, vol.36, issue.1, pp.1-29, 1997.

[. Sullan, Singlecell force spectroscopy of pili-mediated adhesion, Nanoscale, vol.6, issue.2, pp.1134-1143, 2013.

X. Sun and J. Wu, Food derived anti-adhesive components against bacterial adhesion: Current progresses and future perspectives, Trends in Food Science & Technology, vol.69, pp.148-156, 2017.

. Sun, Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera, Nature Communications, vol.6, p.8322, 2015.

[. Surber, Shear and extensional rheology of acid milk gel suspensions with varying ropiness, Journal of Texture Studies, vol.1, pp.1-9, 2019.

[. Takamura, Particle motions in sheared suspensions, Journal of Colloid and Interface Science, vol.81, issue.2, pp.516-530, 1981.

[. Talà, Pseudomonas aeruginosa orchestrates twitching motility by sequential control of type IV pili movements, Nature Microbiology, p.1, 2019.

[. Tarazanova, Cell surface properties of lactococcus lactis reveal milk protein binding specifically evolved in dairy isolates, Frontiers in Microbiology, vol.8, p.1691, 2017.

[. Tarazanova, , 2018.

, Altering textural properties of fermented milk by using surface-engineered lactococcus lactis, Microbial Biotechnology, vol.11, issue.4, pp.770-780

[. Tarazanova, Influence of lactococcal surface properties on cell retention and distribution in cheese curd, International Dairy Journal, vol.85, pp.73-78, 2018.

S. Taskila, Industrial production of starter cultures, Starter Cultures in Food Production, pp.79-100, 2017.

. Tassell, M. L. Miller-;-tassell, and M. J. Miller, Lactobacillus adhesion to mucus, Nutrients, vol.3, issue.5, pp.613-636, 2011.

. Tavares, Milk proteins as encapsulation devices and delivery vehicles: Applications and trends, Trends in Food Science & Technology, vol.37, issue.1, pp.5-20, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01209620

. Teixeira, Survival of lactobacillus delbrueckii ssp. bulgaricus following spray-drying, Journal of Dairy Science, vol.78, issue.5, pp.1025-1031, 1995.

J. Thevenot, Etude en systèmes digestifs artificiels de la survie et de la pathogénicité des Escherichia Coli entérohémorragiques (EHEC), Biotechnologie, 2014.

[. Toh, Genomic adaptation of the Lactobacillus casei group, PloS One, vol.8, issue.10, p.75073, 2013.

[. Toma, Inhibition of microbial growth and metabolism by excess turbulence, Biotechnology and Bioengineering, vol.38, issue.5, pp.552-556, 1991.

S. ;. Tornberg, A. Tornberg, and M. J. Shelley, Simulating the dynamics and interactions of flexible fibers in stokes flows, Journal of Computational Physics, vol.196, issue.1, pp.8-40, 2004.

G. Tripathi, M. K. Tripathi, and S. K. Giri, Probiotic functional foods: Survival of probiotics during processing and storage, Journal of Functional Foods, vol.9, pp.225-241, 2014.

[. Tripathi, Adhesion and nanomechanics of pili from the probiotic lactobacillus rhamnosus GG, ACS Nano, vol.7, issue.4, pp.3685-3697, 2013.

[. Tripathi, Deciphering the nanometer-scale organization and assembly of lactobacillus rhamnosus GG pili using atomic force microscopy, Langmuir, vol.28, issue.4, pp.2211-2216, 2012.

[. Truong, Effect of milk fat globule size on physical properties of milk, Effect of Milk Fat Globule Size on the Physical Functionality of Dairy Products, SpringerBriefs in Food, Health, and Nutrition, pp.35-45, 2016.

L. Tufarelli, V. Tufarelli, and V. Laudadio, An overview on the functional food concept: prospectives and applied researches in probiotics, prebiotics and synbiotics, Journal of Experimental Biology and Agricultural Sciences, vol.4, issue.3, pp.273-278, 2016.

[. Turner, Cell wall elongation mode in Gram-negative bacteria is determined by peptidoglycan architecture, Nature Communications, vol.4, p.1496, 2013.

. Typas, From the regulation of peptidoglycan synthesis to bacterial growth and morphology, Nature Reviews Microbiology, vol.10, issue.2, pp.123-136, 2012.

[. Tytgat, Probiotic Gut Microbiota Isolate Interacts with Dendritic Cells via Glycosylated Heterotrimeric Pili, PLOS ONE, vol.11, issue.3, p.151824, 2016.

[. Uneyama, Self-Consistent Field Model Simulations for Statistics of Amorphous Polymer Chains in Crystalline Lamellar Structures, The Journal of Chemical Physics, vol.141, issue.16, p.164906, 2014.

[. Utratna, Rapid screening for specific glycosylation and pathogen interactions on a 78 species avian egg white glycoprotein microarray, Scientific Reports, vol.7, issue.1, p.6477, 2017.

[. Valerio, In vitro and in vivo survival and transit tolerance of potentially probiotic strains carried by artichokes in the gastrointestinal tract, Applied and Environmental Microbiology, vol.72, issue.4, pp.3042-3045, 2006.

B. H. Van-den-brule, The non-isothermal elastic dumbbell: A model for the thermal conductivity of a polymer solution, Rheologica Acta, vol.29, issue.5, pp.416-422, 1990.

. Van-loosdrecht, Electrophoretic mobility and hydrophobicity as a measured to predict the initial steps of bacterial adhesion, Applied and Environmental Microbiology, vol.53, issue.8, pp.1898-1901, 1987.

. Van-loosdrecht, The role of bacterial cell wall hydrophobicity in adhesion, Applied and Environmental Microbiology, vol.53, issue.8, pp.1893-1897, 1987.

. Van-loosdrecht, Bacterial adhesion: A physicochemical approach, Microbial Ecology, vol.17, issue.1, pp.1-15, 1989.

. Van-loosdrecht, Hydrophobic and electrostatic parameters in bacterial adhesion, Aquatic Sciences, vol.52, issue.1, pp.103-114, 1990.

C. J. Oss-;-van-oss, Energetics of cell-cell and cell-biopolymer interactions, Cell Biophysics, vol.14, issue.1, pp.1-16, 1989.

T. Vliet-;-van-vliet, Strain hardening as an indicator of bread-making performance: A review with discussion, Journal of Cereal Science, vol.48, issue.1, pp.1-9, 2008.

[. Vandenberghe, Determination of a critical stress and distance criterion for crack propagation in cutting models of cheese, Journal of Food Engineering, vol.208, pp.1-10, 2017.

[. Vaudaux, Role of host and bacterial factors in modulating staphylococcal adhesion to implanted polymer surfaces, Journal of Biomaterials Applications, vol.5, issue.2, pp.134-153, 1990.

. [vijaya-kumar, Trends in dairy and non-dairy probiotic products -a review, Journal of Food Science and Technology, vol.52, issue.10, pp.6112-6124, 2015.

[. Vinderola, Survival of probiotic microflora in argentinian yoghurts during refrigerated storage, Food Research International, vol.33, issue.2, pp.97-102, 2000.

[. Vinderola, Influence of compounds associated with fermented dairy products on the growth of lactic acid starter and probiotic bacteria, International Dairy Journal, vol.12, issue.7, pp.579-589, 2002.

[. Vinderola, Viability of probiotic (bifidobacterium, lactobacillus acidophilus and lactobacillus casei) and nonprobiotic microflora in argentinian fresco cheese, Journal of Dairy Science, vol.83, issue.9, pp.1905-1911, 2000.

[. Vinderola, Preservation of functionality of bifidobacterium animalis subsp. lactis INL1 after incorporation of freeze-dried cells into different food matrices, Food Microbiology, vol.30, issue.1, pp.274-280, 2012.

[. Vogt, Quantitative differences among various proteins as blocking agents for ELISA microtiter plates, Journal of Immunological Methods, vol.101, issue.1, pp.43-50, 1987.

. Von-ossowski, Mucosal adhesion properties of the probiotic Lactobacillus rhamnosus GG SpaCBA and SpaFED pilin subunits, Applied and Environmental Microbiology, vol.76, issue.7, pp.2049-2057, 2010.

. [von-ossowski, Functional Characterization of a Mucus-Specific LPxTG Surface Adhesin from Probiotic Lactobacillus rhamnosus GG, Applied and Environmental Microbiology, vol.77, issue.13, pp.4465-4472, 2011.

[. Wadhwani, Improvement in melting and baking properties of low-fat Mozzarella cheese, Journal of Dairy Science, vol.94, issue.4, pp.1713-1723, 2011.

P. Walstra, On the Stability of Casein Micelles, Journal of Dairy Science, vol.73, issue.8, pp.1965-1979, 1990.

[. Wang, Structures of SdrD from staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands, Protein & Cell, vol.4, issue.4, pp.277-285, 2013.

[. Wang, Direct Numerical Simulation on drag-reducing flow by polymer additives using a spring-dumbbell model. Progress in Computational Fluid Dynamics, An International Journal, vol.9, p.217, 2009.

M. Watanabe, H. Watanabe, and Y. Matsumiya, Revisit the Elongational Viscosity of FENE Dumbbell Model, Nihon Reoroji Gakkaishi, vol.45, issue.4, pp.185-190, 2017.

[. Watanabe, Identification of a new adhesin-like protein from Lactobacillus mucosae ME-340 with specific affinity to the human blood group A and B antigens, Journal of Applied Microbiology, vol.109, issue.3, pp.927-935, 2010.

J. C. Way, The mechanism of bacterial asymmetric cell division, BioEssays, vol.18, issue.2, pp.99-101, 1996.

[. Weaver, The effects of shear stress on isolated receptor-ligand interactions of staphylococcus epidermidis and human plasma fibrinogen using molecularly patterned microfluidics, Lab on a Chip, vol.11, issue.5, pp.883-889, 2011.

[. Wei, Quantitative nonlinear thixotropic model with stretched exponential response in transient shear flows, Journal of Rheology, vol.60, issue.6, pp.1301-1315, 2016.

[. Wei, A multimode structural kinetics constitutive equation for the transient rheology of thixotropic elasto-viscoplastic fluids, Journal of Rheology, vol.62, issue.1, pp.321-342, 2018.

C. Weidenmaier and A. Peschel, Teichoic acids and related cell-wall glycopolymers in Gram-positive physiology and host interactions, Nature Reviews Microbiology, vol.6, issue.4, pp.276-287, 2008.

. Welman, A. D. Maddox-;-welman, and I. S. Maddox, Exopolysaccharides from lactic acid bacteria: perspectives and challenges, Trends in Biotechnology, vol.21, issue.6, pp.269-274, 2003.

G. J. Weng, Dislocation theories of work hardening and yield surfaces of single crystals, Acta Mechanica, vol.37, issue.3, pp.217-230, 1980.

[. Whittaker, Mechanisms of adhesion by oral bacteria, Annual Review of Microbiology, vol.50, issue.1, pp.513-552, 1996.

[. Wong, Mechanical strain sensing implicated in cell shape recovery in escherichia coli, Nature Microbiology, vol.2, issue.9, p.17115, 2017.

[. Yang, Effects of shearing on biogas production and microbial community structure during anaerobic digestion with recuperative thickening, Bioresource Technology, vol.234, pp.439-447, 2017.

[. Ye, Formation of a structured clot during the gastric digestion of milk: Impact on the rate of protein hydrolysis, Food Hydrocolloids, vol.52, pp.478-486, 2016.

[. Yeo, Carriers of probiotic microorganisms, Probiotics, number 21 in Microbiology Monographs, pp.191-220, 2011.

B. Yoo and C. M. Lee, Thermoprotective effect of sorbitol on proteins during dehydration, Journal of Agricultural and Food Chemistry, vol.41, issue.2, pp.190-192, 1993.

K. D. Young, The Selective Value of Bacterial Shape, Microbiology and Molecular Biology Reviews, vol.70, issue.3, pp.660-703, 2006.

K. D. Young, Bacterial morphology: why have different shapes?, Current Opinion in Microbiology, vol.10, issue.6, pp.596-600, 2007.

[. Yu, The sugar-specific adhesion/deadhesion apparatus of the marine bacterium Vibriofurnissii is a sensorium that continuously monitors nutrient levels in the environment, Biochemical and Biophysical Research Communications, vol.149, issue.1, pp.86-92, 1987.

Z. Zhang, H. Zhang, and C. Zhou, A dumbbell dispersion model of viscous drops of liquid/liquid mixing in steady-state plane hyperbolic flow fluids, Acta Polymerica Sinica, pp.707-708, 1998.

[. Zhang, Phylogenomic reconstruction of lactic acid bacteria: an update, BMC Evolutionary Biology, vol.11, issue.1, p.1, 2011.

[. Zhou, LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surfaceassociated proteins of Lactic Acid Bacteria, BMC Genomics, vol.11, issue.1, p.651, 2010.

M. Ziff, R. M. Ziff, and E. D. Mcgrady, Kinetics of polymer degradation, Macromolecules, vol.19, issue.10, pp.2513-2519, 1986.

. Ziff, R. M. Ziff, and G. Stell, Kinetics of polymer gelation, The Journal of Chemical Physics, vol.73, issue.7, pp.3492-3499, 1980.

Z. , H. Zita, A. Hermansson, and M. , Effects of Ionic Strength on Bacterial Adhesion and Stability of Flocs in a Wastewater Activated Sludge System, Applied and Environmental Microbiology, vol.60, issue.9, pp.3041-3048, 1994.

S. Åvall-jääskeläinen and A. Palva, Lactobacillus surface layers and their applications, FEMS Microbiology Reviews, vol.29, issue.3, pp.511-529, 2005.

[. Önneby, Effects of di-and polysaccharide formulations and storage conditions on survival of freeze-dried sphingobium sp, World Journal of Microbiology and Biotechnology, vol.29, issue.8, pp.1399-1408, 2013.

J. Publications, J. Guerin, F. Burgain, J. Gomand, C. Scher et al., Milk fat globule membrane glycoproteins: Valuable ingredients for lactic acid bacteria encapsulation?, Critical Reviews in Food Science and Nutrition, pp.1-13, 2017.

J. Guerin, C. Soligot, J. Burgain, M. Huguet, G. Francius et al.,

S. Gomand, Y. L. Lebeer, F. Roux, J. Borges, C. Scher et al., Adhesive interactions between milk fat globule membrane and Lactobacillus rhamnosus GG inhibit bacterial attachment to Caco-2 TC7 intestinal cells, Colloids and Surfaces B: Biointerfaces, vol.167, pp.44-53, 2018.

F. Gomand, F. Borges, J. Burgain, J. Guerin, and C. Gaiani, High-throughput screening approach to evaluate the adhesive behavior of bacteria to milk biomolecules, Food Hydrocolloids, vol.84, pp.537-544, 2018.

F. Gomand, F. Borges, J. Burgain, J. Guerin, A. M. Revol-junelles et al.,

F. Gomand, J. Borges, S. Guerin, G. El-kirat-chatel, D. Francius et al., Adhesive interactions between lactic acid bacteria and ?-lactoglobulin: specificity and impact on bacterial location in whey protein isolate, IF 2018 = 8.51, ranked first journal in Food Science. Available online. Chapter VII.1. Publications F, vol.10, p.1512, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02177524

F. Gomand, S. Spagnolie, J. Petit, J. Burgain, F. Borges et al., Shaving and breaking bacterial chains with a viscous flow: a theoretical and experimental spraying study, Draft. Predicted journal: Soft Matter

F. Gomand, C. Gaiani, F. Borges, and S. Spagnolie, How to model cheese structuration? An overview of mathematical frameworks and perspectives for further development, Draft. Predicted journal: Annual Review of Food Science and Technology

F. Gomand, W. Mitchell, and S. Spagnolie, Elastic dumbbells in a shear flow: dynamics and damages, Draft. Predicted journal: Journal of Fluids and Structures

F. Gomand, F. Borges, J. Burgain, J. Guerin, and C. Gaiani, High-throughput screening approach to evaluate the adhesive behavior of bacteria to milk biomolecules, 3rd Food Structure and Functionality Forum Symposium & 3rd IDF Symposium on Microstructure of Dairy Products, 2018.

F. Gomand, S. Spagnolie, J. Petit, J. Burgain, F. Borges et al., Shaving and breaking bacterial chains with a viscous flow: a theoretical and experimental spraying study, International Scientific Conference on Probiotics, Prebiotics, Gut Mirobiota and Health, 2019.

F. Gomand, S. Spagnolie, J. Petit, J. Burgain, F. Borges et al., Shaving and breaking bacterial chains with a viscous flow: a theoretical and experimental spraying study, Fluid and Elasticity, p.331, 2019.

F. Gomand, F. Borges, J. Burgain, J. Guerin, and C. Gaiani, High-throughput screen

F. Gomand, F. Borges, J. Burgain, J. Guerin, and C. Gaiani, High-throughput the doctoral school SIReNa (Natural Resources Science and Engineering, 2017.

. French, Science et Ingénierie des Ressources Naturelles, 2019.

C. , Maximal surface traction forces on 2-cell, 3-cell, p.9607

C. Table, 1: Maximal surface traction forces (Max STF ) applied to each bacterial cell (ellipsoid body) of chains of 2, 3, and 4cells over time. L=Left cell, ML=middle left cell, MR=middle right cell

C. Table, 2: Maximal surface traction forces (Max STF ) applied to each bacterial cell (ellipsoid body) of 5-cell chains over time. L=Left cell, ML=middle left cell, C=Center cell, MR=middle right cell

. Nagara, Elles leur permettent de se nourrir, Les capacités adhésives des bactéries sont indissociables de leur survie au sein de nombreux environnements, 1987.

. Whittaker, Les interactions adhésives bactéries-hôte sont responsables de la mise en place d'infections dans le cas des bactéries pathogènes [An and Friedman, 1987.

. Carr, Les LAB forment un groupe de bactéries Gram positif, non sporulantes, anaérobies ou aérobies facultatives qui produisent de l'acide lactique comme composé principal de leur catabolisme, Hayek and Ibrahim, 1988.

, Afin de prodiguer leurs effets santé à l'hôte, ces bactéries doivent arriver dans l'intestin à la fois vivantes et fonctionnelles. Des stratégies ont donc été développées afin Chapter IX.1. Introduction et objectifs d'assurer leur protection jusqu

. Chumphon, Ces interactions sont susceptibles de jouer un rôle important en termes de protection et d'efficacité de relargage des probiotiques dans l'intestin, qui a été mis en avant par plusieurs revues de la littérature, Récemment, des phénomènes d'adhésion ont également été observés entre LAB et composants de la matrice alimentaire, notamment au sein de certaines viandes, 1981.

. Jeanson, Des études récentes ont montré que l'adhésion bactérienne aux composants alimentaires pouvait notamment moduler la distribution des bactéries dans l'aliment, 1996.

. Kline, Ces interactions adhésives sont possibles grâce à la présence de protéines à la surface des cellules bactériennes, dont font partie les pili, qui sont des protéines filamentaires sortasedépendantes ancrées par liaisons chimiques de haute énergie à la paroi bactérienne, 2010.

. Arnaud, susceptibles d'endommager la paroi des cellules et donc d'engendrer une diminution des capacités adhésives bactériennes. L'atomisation de suspensions bactériennes, en particulier, ainsi que les étapes de brassage du lait et d'étirement de la matrice fromagère (dans le cas de fromages de type "pâte filée"), génèrent un stress de cisaillement conduisant à des modifications significatives de la surface bactérienne, Ces protéines de surface sont sensibles au stress pouvant être généré lors de certaines étapes industrielles de fabrication alimentaire ou fermentaire, 1993.

D. Bellis, Cependant, la majorité des études menées jusqu'à présent sur l'adhésion bactérienne aux composants de l'aliment se sont concentrées seulement sur quelques souches, 2010.

, phénomène d'adhésion bactérienne aux composants de la matrice alimentaire à l'échelle de groupes de souches, tels que le groupe LAB. Le développement d'outils permettant de caractériser l'adhésion et ses effets sur les bactéries au sein de matrices alimentaires répondrait donc au besoin de l'industrie de mieux comprendre les conditions permettant d'améliorer ou de réduire la viabilité et la fonctionnalité des bactéries probiotiques à l'échelle du groupe LAB. En particulier, une meilleure compréhension de l'impact d'étapes industrielles génératrices de stress pour les bactéries permettrait d'optimiser les procédés de fabrication en vue d

, Mon projet de thèse répond aux trois questions suivantes

, L'adhésion bactérie-?-lactoglobuline présente-elle des caractéristiques communes au sein du groupe des bactéries lactiques ?

, Quel est l'effet du cisaillement sur l'intégrité cellulaire (organisation spatiale et capacités adhésives) de Lactobacillus rhamnosus GG ?

, Quelle est l'influence des interactions adhésives bactérie-particule sur la dynamique du système et les forces exercées sur la bactérie ?

I. X. Le-chapitre, , vol.2

, Ce phénomène pourrait être étudié à l'échelle expérimentale, en recréant des contraintes de cisaillement en conditions de cultures, afin de suivre l'évolution naturelle des phénotypes bactériens sur plusieurs générations. Notre modèle ayant également mis en évidence un phénomène de régiosélectivité des forces de traction appliquées sur les cellules d'une chaîne bactérienne soumise à un cisaillement, ce phénomène serait alors créateur d, de cisaillement suggère l'existence d'avantages sélectifs conférés par la configuration en chaînes par rapport à la configuration en cellules isolées dans cet environnement

, Une revue a récemment mis en avant l'intérêt de l'hétérogénéité pour la survie de populations bactériennes soumises à des changements environnementaux imprévisibles

. Bridier, L'hétérogénéité née du cisaillement au sein d'une population bactérienne pourrait ainsi être étudiée plus en détails en relation avec les avantages évolutifs qu'elle pourrait conférer à certains individus, en utilisant des approches de single-cell, 2015.